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[185216_at]

Description ZK1290.1 /REP_DB=WormBase Gene ID /WP=CE01447 /TR=Q23439 /GB=AAB93311.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 49      4grp_total > 23      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 13.7
(-0.6)
A 		7.4
(-2.1)
A 		3.4
(-3)
A 		29.4
(3)
A 		26
B 17.8
(3)
A 		7.5
(-1.6)
A 		4.5
(-3)
A 		4.6
(-3)
A 		13
C 33.1
(3)
A 		9
(-2.1)
A 		5
(-3)
A 		21
(0.4)
A 		28
avr 21.5
(3) 		8
(-1.7) 		4.3
(-3) 		18.3
(1.9) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 62.7
(3)
A 		14.1
(-3)
A 		23.4
(-1.9)
A 		22.9
(-1.9)
A 		25.1
(-1.6)
A 		57.9
(2.4)
A 		49
B 24.3
(1.3)
A 		18.1
(-0.9)
A 		12.2
(-3)
A 		14.5
(-2.2)
A 		17.5
(-1.1)
A 		29
(3)
A 		17
C 22.2
(-0.6)
A 		20.2
(-1.2)
A 		28.2
(1)
A 		35.5
(3)
A 		34
(2.6)
A 		13.5
(-3)
A 		22
avr 36.4
(3) 		17.5
(-3) 		21.3
(-1.8) 		24.3
(-0.8) 		25.5
(-0.5) 		33.5
(2.1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 5
(3)
A 		1.6
(-2)
A 		0.9
(-3)
A 		4.3
(2)
A 		4
B 5.7
(3)
A 		1.9
(-1.9)
A 		1
(-3)
A 		1
(-3)
A 		5
C 10.9
(3)
A 		2.6
(-2.5)
A 		1.8
(-3)
A 		3.5
(-1.9)
A 		9
avr 7.2
(3) 		2
(-2.2) 		1.2
(-3) 		2.9
(-1.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 11.6
(1.4)
A 		5
(-3)
A 		5.1
(-2.9)
A 		5.8
(-2.5)
A 		7.6
(-1.3)
A 		14.1
(3)
A 		9
B 8.5
(1.2)
A 		6
(-0.7)
A 		3
(-3)
A 		3.8
(-2.4)
A 		7.1
(0.2)
A 		10.8
(3)
A 		8
C 8.2
(0.4)
A 		6.2
(-1.4)
A 		7.2
(-0.5)
A 		7.1
(-0.6)
A 		11
(3)
A 		4.5
(-3)
A 		7
avr 9.4
(2.5) 		5.7
(-2.2) 		5.1
(-3) 		5.6
(-2.4) 		8.6
(1.5) 		9.8
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185216_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4840
Sequence Type Exemplar sequence
Representative Public ID ZK1290.1 NCBI
Target Description ZK1290.1 /REP_DB=WormBase Gene ID /WP=CE01447 /TR=Q23439 /GB=AAB93311.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063186(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063186 NCBI Caenorhabditis elegans ZK1290.1 (ZK1290.1) mRNA, complete cds. 11/11 None
SNAP00000002682 ENSEMBL cdna:SNAP chromosome:CEL140:II:7561688:7562510:1 11/11 None
GENEFINDER00000002693 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7561688:7562589:1 11/11 None
ZK1290.1 ENSEMBL cdna:known chromosome:CEL140:II:7561688:7562510:1 gene:ZK1290.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7561684-7562507(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1290.1
Entrez Gene 191554 Entrez gene
SwissProt Q23439 EMBL-EBI
WormBase CE01447 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93311 Hypothetical protein ZK1290.1 [Caenorhabditis elegans] ref|NP_495587.1| ZK1290.1 [Caenorhabditis elegans] 1.0E-108
blast CAE67490 Hypothetical protein CBG12995 [Caenorhabditis briggsae] 8.0E-71
blast CAE67490 Hypothetical protein CBG12995 [Caenorhabditis briggsae] 9.0E-71
Sequence
Target Sequence 
>C. ELEGANS:185216_AT
gggttttgacacttgttcaggcacattttgccattcttgcggttgcagacactacggtgg
cagttgaagaaaccactaaagctgccaacgaaacaacgacacctgatggtccccatgccg
actgctttctctgtgctcctacagtacaatgtggagaaacagttgaaggagactattcaa
gtggagaagttaatgtacttctaatgaaaccgatggaagataacgactattttattgtga
aaggagaagtattcccgaatgctatgaaaattttcatcgacatctacaaggatttgtcag
ttggaaaagctcaagaaggcggaaacaatcagccgagacttctcacattcgaacactatt
tcgacacaaatttgacgttttctcgttccaatttacatggagaaggcgttccggactctt
tccgtgaggcaacattgccagatgctatcaaacaaaaaaaaccatggacgctgatgttta
aaatgaaggatggtttgagtgcatttgaaaccggagatgagactggatggttcaacaatg
atattccatggaatggaaccgccacaactcaatccttcaatattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTTTTGACACTTGTTCAGGCACA 211 497 23 Antisense
CACATTTTGCCATTCTTGCGGTTGC 332 195 44 Antisense
TTGCGGTTGCAGACACTACGGTGGC 251 691 59 Antisense
AAGAAACCACTAAAGCTGCCAACGA 213 153 89 Antisense
GAAACAACGACACCTGATGGTCCCC 412 355 112 Antisense
CTTTCTCTGTGCTCCTACAGTACAA 522 223 147 Antisense
GAAACAATCAGCCGAGACTTCTCAC 654 355 344 Antisense
GAGACTTCTCACATTCGAACACTAT 590 393 357 Antisense
ACATGGAGAAGGCGTTCCGGACTCT 488 93 417 Antisense
TTCCGGACTCTTTCCGTGAGGCAAC 394 697 431 Antisense
GCCACAACTCAATCCTTCAATATTC 428 279 583 Antisense
Sequence Source Affymetrix Proprietary Database