[Home] | [Total List]

[185215_at]

Description Y46G5A.28 /REP_DB=WormBase Gene ID /WP=CE21978 /TR=Q9U2E1 /GB=CAB60371.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 03      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 20.8
(-1)
A 		4.5
(-3)
A 		11.8
(-2.1)
A 		54.2
(3)
A 		50
B 7.3
(3)
A 		4.3
(-3)
A 		6.8
(2)
A 		6.3
(1)
A 		3
C 2.8
(-3)
A 		9.9
(-2.3)
A 		3.1
(-3)
A 		66.3
(3)
A 		64
avr 10.3
(-2.3) 		6.2
(-3) 		7.2
(-2.8) 		42.3
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 20.9
(-1.6)
A 		24.5
(-1.4)
A 		28.2
(-1.1)
A 		3.8
(-2.9)
A 		2.5
(-3)
A 		82.7
(3)
M 		80
B 5
(-3)
A 		4.5
(-3)
A 		8.2
(-2.8)
A 		5.6
(-2.9)
A 		22.3
(-2)
A 		115.6
(3)
P 		111
C 7.2
(-2.8)
A 		19.7
(-2.1)
A 		6.6
(-2.8)
A 		9.7
(-2.6)
A 		3.2
(-3)
A 		111.3
(3)
P 		108
avr 11
(-2.7) 		16.2
(-2.4) 		14.3
(-2.5) 		6.4
(-3) 		9.3
(-2.8) 		103.2
(3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 7.6
(2.7)
A 		1
(-3)
A 		3.1
(-1.2)
A 		7.9
(3)
A 		7
B 2.3
(3)
A 		1.1
(-3)
A 		1.6
(-0.5)
A 		1.3
(-2)
A 		1
C 0.9
(-3)
A 		2.8
(-1.9)
A 		1.1
(-2.9)
A 		11.2
(3)
A 		10
avr 3.6
(-0.7) 		1.6
(-3) 		1.9
(-2.7) 		6.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 3.8
(-2.1)
A 		8.7
(-0.5)
A 		6.1
(-1.4)
A 		1
(-2.9)
A 		0.8
(-3)
A 		20.1
(3)
M 		19
B 1.7
(-3)
A 		1.5
(-3)
A 		2
(-2.9)
A 		1.5
(-3)
A 		9
(-1.9)
A 		43.1
(3)
P 		42
C 2.7
(-2.7)
A 		6
(-2.2)
A 		1.7
(-2.9)
A 		2
(-2.8)
A 		1
(-3)
A 		37.2
(3)
P 		36
avr 2.7
(-2.8) 		5.4
(-2.3) 		3.3
(-2.7) 		1.5
(-3) 		3.6
(-2.6) 		33.5
(3) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185215_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3016
Sequence Type Exemplar sequence
Representative Public ID Y46G5A.28 NCBI
Target Description Y46G5A.28 /REP_DB=WormBase Gene ID /WP=CE21978 /TR=Q9U2E1 /GB=CAB60371.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064332 NCBI Caenorhabditis elegans Y46G5A.28 (Y46G5A.28) mRNA, complete cds. 11/11 None
SNAP00000039011 ENSEMBL cdna:SNAP chromosome:CEL140:II:12850349:12851717:1 11/11 None
GENEFINDER00000039037 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12850349:12851717:1 11/11 None
Y46G5A.28 ENSEMBL cdna:known chromosome:CEL140:II:12850331:12851799:1 gene:Y46G5A.28 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12850345-12851714(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46G5A.28
Entrez Gene 174921 Entrez gene
SwissProt Q9U2E1 EMBL-EBI
WormBase CE21978 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60371 Hypothetical protein Y46G5A.28 [Caenorhabditis elegans] ref|NP_496733.1| Y46G5A.28 [Caenorhabditis elegans] 0.0
blast CAB60370 Hypothetical protein Y46G5A.27 [Caenorhabditis elegans] ref|NP_496732.1| Patterned Expression Site family member (pes-10) [Caenorhabditis elegans] sp|P41991|PES10_CAEEL Protein pes-10 gb|AAA50369.1| PES-10 1.0E-117
blast CAB03926 Hypothetical protein C27C7.7 [Caenorhabditis elegans] ref|NP_492917.1| C27C7.7 [Caenorhabditis elegans] 1.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR009819 EMBL-EBI Pes-10 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185215_AT
aaccgaatccggaatctacactgatgaggagctggagctggaagatcattttgaagccgt
acgaaaagaggatcgcaaagatcaagtaatgactgaaatctgcatgatgctcctagcagg
ttatatcagatccggaaatagtgaagtgatctctgcagctattaagttcacctgggcttt
cgattattcattggagatgtatcaaaagtacgacattcagaatttgatctacaattttgg
agttcacaatgacgatgccgagcttctgatgaaccacatcaaagagcttcaagcaaggga
acttttcaatgagaatcgcaaattcttcaagagattcttgagaacttgtatggaagagaa
gacaattactgattcagttttgtcttatttgaaaggatttctggagaacggggatgacta
tatggtttcctgcacattgaagttccttctaggaatgccgattacgctgagccaattcaa
gactagccacgtggaagcctgccttgaaaatcttgaatcaggaccttcggcacaactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACCGAATCCGGAATCTACACTGAT 72 147 621 Antisense
ATCTGCATGATGCTCCTAGCAGGTT 144 29 718 Antisense
ATCTCTGCAGCTATTAAGTTCACCT 187 33 769 Antisense
AGTTCACCTGGGCTTTCGATTATTC 620 61 785 Antisense
GAGTTCACAATGACGATGCCGAGCT 88 399 860 Antisense
ATGCCGAGCTTCTGATGAACCACAT 137 41 875 Antisense
GGGATGACTATATGGTTTCCTGCAC 421 495 1031 Antisense
GTTTCCTGCACATTGAAGTTCCTTC 324 451 1045 Antisense
TAGGAATGCCGATTACGCTGAGCCA 502 653 1070 Antisense
GCTGAGCCAATTCAAGACTAGCCAC 667 293 1086 Antisense
TGAATCAGGACCTTCGGCACAACTT 113 575 1134 Antisense
Sequence Source Affymetrix Proprietary Database