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[185214_at]

Description Y45F10A.3 /REP_DB=WormBase Gene ID /WP=CE18394 /TR=O62460 /GB=CAA16366.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 25      6grp_cgc > 76      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 278.3
(-3)
A 		341.9
(-1.2)
A 		388.3
(0.1)
A 		491.5
(3)
P 		213
B 290.1
(-3)
A 		375.8
(-0.4)
A 		387.6
(0)
M 		485
(3)
P 		195
C 290.2
(-3)
A 		388.8
(0.2)
A 		332.4
(-1.6)
M 		474.4
(3)
M 		184
avr 286.2
(-3) 		368.8
(-0.5) 		369.4
(-0.5) 		483.6
(3) 		197

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 772
1 2 3 4 5 6 range
A 264.4
(-3)
A 		409.9
(-1.6)
P 		897.5
(3)
P 		876.6
(2.8)
P 		727.3
(1.4)
P 		591.2
(0.1)
P 		633
B 363.1
(-3)
A 		463.9
(-1.8)
P 		810.2
(2.3)
P 		870.6
(3)
P 		847.6
(2.7)
P 		636.8
(0.2)
P 		508
C 261.9
(-3)
A 		513.4
(-1)
P 		640.1
(-0.1)
P 		1033.4
(3)
P 		562.6
(-0.7)
P 		824.8
(1.4)
P 		772
avr 296.5
(-3) 		462.4
(-1.4) 		782.6
(1.6) 		926.9
(3) 		712.5
(1) 		684.3
(0.7) 		630
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 101.3
(3)
A 		74.2
(-2.5)
A 		101.5
(3)
A 		71.9
(-3)
P 		30
B 92.5
(-1.8)
A 		92.8
(-1.7)
A 		89.8
(-3)
M 		103.3
(3)
P 		14
C 96.1
(-0.3)
A 		111.8
(2.3)
A 		115.8
(3)
M 		80
(-3)
M 		36
avr 96.6
(1) 		92.9
(-0.3) 		102.4
(3) 		85.1
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 296
1 2 3 4 5 6 range
A 48.7
(-3)
A 		145.8
(0.4)
P 		195.5
(2.1)
P 		222.3
(3)
P 		219.5
(2.9)
P 		143.9
(0.3)
P 		174
B 126.3
(-3)
A 		154.4
(-2.2)
P 		196.7
(-1.1)
P 		230.6
(-0.1)
P 		344.4
(3)
P 		237.5
(0.1)
P 		218
C 97.1
(-3)
A 		156.7
(-1)
P 		162.9
(-0.8)
P 		207.8
(0.7)
P 		182.1
(-0.2)
P 		276.1
(3)
P 		179
avr 90.7
(-3) 		152.3
(-0.7) 		185
(0.6) 		220.2
(1.9) 		248.7
(3) 		219.2
(1.9) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185214_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8611
Sequence Type Exemplar sequence
Representative Public ID Y45F10A.3 NCBI
Target Description Y45F10A.3 /REP_DB=WormBase Gene ID /WP=CE18394 /TR=O62460 /GB=CAA16366.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070204 NCBI Caenorhabditis elegans Y45F10A.3 (Y45F10A.3) mRNA, complete cds. 11/11 None
Y45F10A.3 ENSEMBL cdna:known chromosome:CEL140:IV:13509194:13512775:1 gene:Y45F10A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000021292 8/11 Cross Hyb Matching Probes None
GENEFINDER00000021296 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13509199-13512781(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y45F10A.3
Entrez Gene 189911 Entrez gene
SwissProt O62460 EMBL-EBI
WormBase CE18394 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16366 Hypothetical protein Y45F10A.3 [Caenorhabditis elegans] ref|NP_502605.1| Y45F10A.3 [Caenorhabditis elegans] 1.0E-138
blast CAE58591 Hypothetical protein CBG01758 [Caenorhabditis briggsae] 3.0E-47
blast CAE58590 Hypothetical protein CBG01757 [Caenorhabditis briggsae] 5.0E-42
Sequence
Target Sequence 
>C. ELEGANS:185214_AT
agaaatgtttggctgtcgtccacgtggcacaaaagcttggctacactgtagtcagcgtgg
gatacgactatgccaacaaggatcatgtattgagcaagacgatcgttgaagctttggaag
gagttcagtttgctctgaaaaagttcaagaatgcgaagaaaattgtgattggaggacact
cagtcggagcacacctcgcatttcaagctgtaacacggatccatgacccccgaatcagtg
gtgcctacctcagcgcgggcatctacaaaattcaagaactgacttccacgacttatggtc
acgatcttgggttgacttcagaagaagcagaaacttgtagttgtgattatgagcttatga
agcatgtccggttcccggtgttaatcgcatgttgcagacgggaatccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAATGTTTGGCTGTCGTCCACGT 185 73 266 Antisense
GTCGTCCACGTGGCACAAAAGCTTG 278 473 280 Antisense
TGGAGGACACTCAGTCGGAGCACAC 626 549 435 Antisense
CACACCTCGCATTTCAAGCTGTAAC 496 195 455 Antisense
AAGCTGTAACACGGATCCATGACCC 109 151 470 Antisense
TCAGCGCGGGCATCTACAAAATTCA 491 623 515 Antisense
GAACTGACTTCCACGACTTATGGTC 258 349 541 Antisense
GACTTATGGTCACGATCTTGGGTTG 523 371 555 Antisense
TGAAGCATGTCCGGTTCCCGGTGTT 363 665 623 Antisense
GTTCCCGGTGTTAATCGCATGTTGC 609 441 636 Antisense
ATCGCATGTTGCAGACGGGAATCCC 210 35 649 Antisense
Sequence Source Affymetrix Proprietary Database