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[185213_at]

Description F19B10.6 /REP_DB=WormBase Gene ID /WP=CE09473 /TR=O02069 /GB=AAB52921.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 3.5
(-3)
A 		5.5
(-2.8)
A 		11.4
(-2.3)
A 		71
(3)
M 		68
B 6.2
(-2.7)
A 		16.8
(-1.3)
A 		4.2
(-3)
A 		48
(3)
A 		44
C 9.5
(3)
A 		8.4
(1.7)
A 		4.6
(-3)
A 		8
(1.2)
A 		5
avr 6.4
(-3) 		10.2
(-2.4) 		6.7
(-2.9) 		42.3
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 3.9
(-2.7)
A 		3.6
(-2.8)
A 		2.9
(-3)
A 		4.7
(-2.5)
A 		3.4
(-2.9)
A 		26.3
(3)
A 		23
B 3.4
(-2.8)
A 		2.7
(-3)
A 		26.7
(3)
A 		4
(-2.7)
A 		2.6
(-3)
A 		2.8
(-3)
A 		24
C 2.4
(-2.6)
A 		4.2
(-1)
A 		5.8
(0.3)
A 		3.7
(-1.5)
A 		1.9
(-3)
A 		8.9
(3)
A 		7
avr 3.2
(-2.6) 		3.5
(-2.5) 		11.8
(2.5) 		4.1
(-2.1) 		2.6
(-3) 		12.7
(3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.3
(-2.9)
A 		1.2
(-3)
A 		3
(-1.8)
A 		10.4
(3)
M 		9
B 2
(-2.3)
A 		4.2
(-0.9)
A 		1
(-3)
A 		10.2
(3)
A 		9
C 3.2
(3)
A 		2.4
(0.3)
A 		1.6
(-2.3)
A 		1.4
(-3)
A 		2
avr 2.2
(-2.7) 		2.6
(-2.2) 		1.9
(-3) 		7.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.7
(-2.9)
A 		1.3
(-2.3)
A 		0.6
(-3)
A 		1.2
(-2.4)
A 		1
(-2.6)
A 		6.4
(3)
A 		6
B 1.2
(-2.7)
A 		0.9
(-3)
A 		6.5
(3)
A 		1.1
(-2.8)
A 		1
(-2.9)
A 		1
(-2.9)
A 		6
C 0.9
(-2.3)
A 		1.3
(-1.3)
A 		1.5
(-0.8)
A 		0.7
(-2.8)
A 		0.6
(-3)
A 		3
(3)
A 		2
avr 0.9
(-3) 		1.2
(-2.3) 		2.9
(1.6) 		1
(-2.8) 		0.9
(-3) 		3.5
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185213_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4068
Sequence Type Exemplar sequence
Representative Public ID F19B10.6 NCBI
Target Description F19B10.6 /REP_DB=WormBase Gene ID /WP=CE09473 /TR=O02069 /GB=AAB52921.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062206(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062206 NCBI Caenorhabditis elegans F19B10.6 (F19B10.6) mRNA, complete cds. 11/11 None
SNAP00000017113 ENSEMBL cdna:SNAP chromosome:CEL140:II:3663503:3663890:-1 11/11 None
GENEFINDER00000017132 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3663503:3663890:-1 11/11 None
F19B10.6 ENSEMBL cdna:known chromosome:CEL140:II:3663503:3663890:-1 gene:F19B10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3663501-3663889(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19B10.6
Entrez Gene 184671 Entrez gene
SwissProt O02069 EMBL-EBI
WormBase CE09473 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52921 Hypothetical protein F19B10.6 [Caenorhabditis elegans] ref|NP_494607.1| F19B10.6 [Caenorhabditis elegans] 5.0E-59
Sequence
Target Sequence 
>C. ELEGANS:185213_AT
ggcgtcttccatttctaaatgctccattttcctgctcctactgggagttttggaaatttc
ttcagctccaactgcttccaaacccgtactagagaaaatcgatgctatcagtgcgctcta
caaagttacaaaagctaaagaggcttacatgaaggcacctgggccaaaaaatgccacgat
tgtcaaagattttgacagtcaaatcaatttgctgagcatgggagttaaccacccagctga
tgatcttgagccaccctacggatcttttagagcacatccgccaccaccaaataagatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGTCTTCCATTTCTAAATGCTCC 340 541 15 Antisense
CATTTTCCTGCTCCTACTGGGAGTT 589 213 39 Antisense
GAAATTTCTTCAGCTCCAACTGCTT 173 363 67 Antisense
CTGCTTCCAAACCCGTACTAGAGAA 346 229 86 Antisense
AAATCGATGCTATCAGTGCGCTCTA 239 119 110 Antisense
GAGGCTTACATGAAGGCACCTGGGC 217 405 154 Antisense
GCACCTGGGCCAAAAAATGCCACGA 498 315 169 Antisense
GCATGGGAGTTAACCACCCAGCTGA 330 309 230 Antisense
ACCCAGCTGATGATCTTGAGCCACC 156 91 245 Antisense
CCACCCTACGGATCTTTTAGAGCAC 688 271 265 Antisense
CATCCGCCACCACCAAATAAGATTA 503 211 289 Antisense
Sequence Source Affymetrix Proprietary Database