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[185212_at]

Description C13A10.3 /REP_DB=WormBase Gene ID /WP=CE08125 /TR=P91045 /GB=AAB37940.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 60      6grp_total > 06      4grp_total > 30      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 686.1
(3)
P 		476.9
(-0.6)
P 		341.6
(-3)
P 		558.3
(0.8)
P 		345
B 718.9
(3)
P 		392.8
(-2.7)
P 		374.7
(-3)
P 		581.5
(0.6)
P 		344
C 660.7
(3)
P 		446.2
(-1.5)
P 		377.1
(-3)
P 		568.7
(1.1)
P 		284
avr 688.6
(3) 		438.6
(-1.6) 		364.5
(-3) 		569.5
(0.8) 		324

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 665.5
(3)
P 		526.2
(1.1)
P 		235.6
(-3)
P 		270.3
(-2.5)
P 		365.6
(-1.2)
P 		275.4
(-2.4)
P 		430
B 587.1
(3)
P 		477.4
(0.8)
P 		321.5
(-2.4)
P 		375.3
(-1.3)
P 		341
(-2)
P 		290.9
(-3)
P 		296
C 591.8
(3)
P 		478.4
(1)
P 		368.8
(-1)
P 		253.8
(-3)
P 		325.4
(-1.7)
P 		288.7
(-2.4)
P 		338
avr 614.8
(3) 		494
(0.8) 		308.6
(-2.6) 		299.8
(-2.7) 		344
(-1.9) 		285
(-3) 		330
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 249.8
(3)
P 		103.5
(-2.2)
P 		89.3
(-2.7)
P 		81.7
(-3)
P 		168
B 229.2
(3)
P 		97
(-2.6)
P 		86.8
(-3)
P 		123.9
(-1.4)
P 		142
C 218.7
(3)
P 		128.3
(-1.4)
P 		131.4
(-1.3)
P 		95.9
(-3)
P 		123
avr 232.6
(3) 		109.6
(-2.6) 		102.5
(-2.9) 		100.5
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 122.7
(0.2)
P 		187.1
(3)
P 		51.3
(-3)
P 		68.6
(-2.2)
P 		110.3
(-0.4)
P 		67.1
(-2.3)
P 		136
B 204.3
(3)
P 		158.9
(0.8)
P 		78.1
(-3)
P 		99.4
(-2)
P 		138.5
(-0.1)
P 		108.5
(-1.6)
P 		126
C 219.4
(3)
P 		146
(0.4)
P 		93.9
(-1.5)
P 		51
(-3)
P 		105.3
(-1.1)
P 		96.7
(-1.4)
P 		168
avr 182.1
(3) 		164
(2) 		74.4
(-2.9) 		73
(-3) 		118
(-0.5) 		90.8
(-2) 		109
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185212_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4148
Sequence Type Exemplar sequence
Representative Public ID C13A10.3 NCBI
Target Description C13A10.3 /REP_DB=WormBase Gene ID /WP=CE08125 /TR=P91045 /GB=AAB37940.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061549(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061549 NCBI Caenorhabditis elegans JNK Interacting Protein (scaffold protein) family member (jip-1) (jip-1) mRNA, complete cds. 10/11 None
F56D12.4 ENSEMBL cdna:known chromosome:CEL140:II:1327001:1350118:1 gene:F56D12.4 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024148 5/11 Cross Hyb Matching Probes None
GENEFINDER00000024149 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1347155-1350236(+) 92.09 100.0
Public Domain and Genome References
Gene Title
Gene Symbol jip-1
Ensembl F56D12.4
Entrez Gene 173513 Entrez gene
SwissProt O16643 EMBL-EBI
WormBase CE37024 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66117 Jnk interacting protein (scaffold protein) protein 1 [Caenorhabditis elegans] ref|NP_493950.2| JNK Interacting Protein (scaffold protein) family member (jip-1) [Caenorhabditis elegans] 0.0
blast C88042 protein F56D12.4 [imported] - Caenorhabditis elegans 0.0
blast CAE62912 Hypothetical protein CBG07104 [Caenorhabditis briggsae] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 7.0E-19
Sequence
Target Sequence 
>C. ELEGANS:185212_AT
ttgtttgggagctctgccgactaatgcaaccaaaattctatcaggcgaccgtgatacctt
ctacctgacaatgctcgcctccatcgaggtggctcaccataagggaaacgacgttctgac
gcaggcaatgaacaaagttttgtcaatgtacaaaaattcggaagagattatcgtaccgca
gactgtactaatggagatttcatttcgaggaattcatgtcattgataaaaggcggaaaaa
tatatttcggatttatcacgaaacacccgttgctgccacgtttcgcttgccacgtgttca
tgtccaaaaatacgacacagccgattgtagaggctattgggtacggtattcaggggacgt
gctttcaaacgatcttatgatgaatatatggcttttgctcaccccacggaagatatttat
ttggaataatttttttttaattttaaaatcaatttgtcatccacctgatcttgctatttt
tgtaatacggttttttccattcata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTTGGGAGCTCTGCCGACTAAT 581 703 336 Antisense
TATCAGGCGACCGTGATACCTTCTA 529 659 374 Antisense
CCTCCATCGAGGTGGCTCACCATAA 649 265 413 Antisense
GAAACGACGTTCTGACGCAGGCAAT 487 357 440 Antisense
AAGAGATTATCGTACCGCAGACTGT 399 153 497 Antisense
TTTATCACGAAACACCCGTTGCTGC 586 673 587 Antisense
GGTATTCAGGGGACGTGCTTTCAAA 443 503 680 Antisense
TTTTGCTCACCCCACGGAAGATATT 149 675 728 Antisense
TCAATTTGTCATCCACCTGATCTTG 321 633 784 Antisense
ATCCACCTGATCTTGCTATTTTTGT 239 41 794 Antisense
TGTAATACGGTTTTTTCCATTCATA 129 559 816 Antisense
Sequence Source Affymetrix Proprietary Database