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[185211_at]

Description K08D10.8 /REP_DB=WormBase Gene ID /WP=CE07360 /TR=Q21318 /GB=AAA98028.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 59      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 28
(-2.2)
A 		24.2
(-3)
A 		52.5
(3)
A 		50
(2.5)
A 		28
B 60.7
(0.8)
A 		83.2
(3)
A 		68.4
(1.6)
A 		21.3
(-3)
A 		62
C 59.1
(3)
A 		52
(-0.4)
A 		46.6
(-3)
A 		58.1
(2.5)
A 		13
avr 49.3
(-0.1) 		53.1
(1.7) 		55.8
(3) 		43.1
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 173
1 2 3 4 5 6 range
A 57.2
(-1.3)
A 		8.9
(-3)
A 		40.5
(-1.9)
A 		22.7
(-2.5)
A 		86.3
(-0.3)
A 		181.8
(3)
M 		173
B 45
(-1.7)
A 		53.3
(-1.4)
A 		39.2
(-1.9)
A 		9.6
(-3)
A 		106.6
(0.6)
P 		172.8
(3)
P 		163
C 50.2
(-2)
A 		55.7
(-1.7)
A 		63
(-1.3)
A 		31.4
(-3)
A 		143.2
(3)
P 		122.9
(1.9)
P 		112
avr 50.8
(-1.7) 		39.3
(-2.2) 		47.6
(-1.9) 		21.2
(-3) 		112
(0.9) 		159.2
(3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 10.2
(0.5)
A 		5.3
(-3)
A 		13.7
(3)
A 		7.3
(-1.6)
A 		8
B 19.4
(2.6)
A 		20.5
(3)
A 		15.8
(1.2)
A 		4.5
(-3)
A 		16
C 19.6
(3)
A 		14.9
(0.1)
A 		16.2
(0.9)
A 		9.8
(-3)
A 		10
avr 16.4
(3) 		13.6
(1.2) 		15.2
(2.2) 		7.2
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 10.5
(-1.9)
A 		3.2
(-3)
A 		8.8
(-2.2)
A 		5.8
(-2.6)
A 		26
(0.3)
A 		44.3
(3)
M 		41
B 15.7
(-1.7)
A 		17.7
(-1.5)
A 		9.5
(-2.3)
A 		2.5
(-3)
A 		43.3
(1)
P 		64.4
(3)
P 		62
C 18.6
(-1.2)
A 		17
(-1.4)
A 		16
(-1.5)
A 		6.3
(-3)
A 		46.3
(3)
P 		41.1
(2.2)
P 		40
avr 14.9
(-1.7) 		12.6
(-2) 		11.4
(-2.1) 		4.9
(-3) 		38.5
(1.5) 		49.9
(3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185211_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10445
Sequence Type Exemplar sequence
Representative Public ID K08D10.8 NCBI
Target Description K08D10.8 /REP_DB=WormBase Gene ID /WP=CE07360 /TR=Q21318 /GB=AAA98028.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068099 NCBI Caenorhabditis elegans K08D10.8 (K08D10.8) mRNA, complete cds. 11/11 None
SNAP00000009681 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4162515:4164416:1 11/11 None
GENEFINDER00000009696 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4162515:4164416:1 11/11 None
K08D10.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:4162446:4164466:1 gene:K08D10.8 11/11 None
K08D10.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:4162510:4164466:1 gene:K08D10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4162520-4164422(+) 97.15 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D10.8
Entrez Gene 177180 Entrez gene
SwissProt Q21318 EMBL-EBI
WormBase CE07360 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98028 Hypothetical protein K08D10.8 [Caenorhabditis elegans] ref|NP_500500.1| K08D10.8 [Caenorhabditis elegans] 1.0E-172
blast AAA98028 Hypothetical protein K08D10.8 [Caenorhabditis elegans] ref|NP_500500.1| K08D10.8 [Caenorhabditis elegans] 1.0E-165
blast AAA98029 Hypothetical protein K08D10.7 [Caenorhabditis elegans] ref|NP_500501.1| K08D10.7 [Caenorhabditis elegans] 1.0E-154
blast AAA98029 Hypothetical protein K08D10.7 [Caenorhabditis elegans] ref|NP_500501.1| K08D10.7 [Caenorhabditis elegans] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Pfam IPR005552 EMBL-EBI Scramblase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185211_AT
gaaagatcgaacatcttcgctcgtcagtacgaaggaaacgatcgtaacttcggaatgcag
atcatggatacccacggagctcaggtgatgacgtgcttcagaggaagaccatgctgctcg
accgatgattttctgagcacccagttcctcgatcagcagattgggatgatgaagaaggag
tgctgcaatcctaatttcgagctcgtcggatccggctgcaaccagcccctgctcatccaa
tctccaggttgtgcaggctgtggtggcacccagaagttcccagtgatgaccttcaatggt
gtgctcgtcggagaaattgtccgcctctacccgggattcatgcaggagatgttcaccgat
gcggacacctatattgttcatttcccaatggacatgccgccaatcttgaagcttctgctt
gtcacctcggttttcctgatcgacttcacctacttcgaggatcgtaaccaggatcaacat
cgtaacggcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGATCGAACATCTTCGCTCGTC 362 359 403 Antisense
ATCATGGATACCCACGGAGCTCAGG 115 27 463 Antisense
GGAGCTCAGGTGATGACGTGCTTCA 430 521 478 Antisense
CATGCTGCTCGACCGATGATTTTCT 123 211 512 Antisense
CAATCCTAATTTCGAGCTCGTCGGA 144 181 588 Antisense
TCATCCAATCTCCAGGTTGTGCAGG 239 621 635 Antisense
GGTTGTGCAGGCTGTGGTGGCACCC 550 507 649 Antisense
GGCACCCAGAAGTTCCCAGTGATGA 427 535 667 Antisense
GATGACCTTCAATGGTGTGCTCGTC 99 411 687 Antisense
GTGCTCGTCGGAGAAATTGTCCGCC 197 473 703 Antisense
ACCAGGATCAACATCGTAACGGCGG 30 85 869 Antisense
Sequence Source Affymetrix Proprietary Database