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[185210_s_at]

Description K11D12.5 /REP_DB=WormBase Gene ID /WP=CE12134 /TR=O44620 /GB=AAB94225.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 10      6grp_total > 27      4grp_total > 59      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1895
1 2 3 4 range
A 1690.3
(0.1)
P 		2540.8
(3)
P 		2232.3
(1.9)
P 		783.3
(-3)
P 		1758
B 1793
(0.8)
P 		2175.7
(2.1)
P 		2442.9
(3)
P 		646
(-3)
P 		1797
C 1590.6
(0.7)
P 		2117.1
(3)
P 		2101
(2.9)
P 		717.8
(-3)
P 		1399
avr 1691.3
(0.7) 		2277.9
(3) 		2258.7
(2.9) 		715.7
(-3) 		1562

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 832
1 2 3 4 5 6 range
A 1796.4
(3)
P 		1308.9
(-0.7)
P 		1153.8
(-1.9)
P 		1013.1
(-3)
P 		1149.6
(-2)
P 		1198.7
(-1.6)
P 		783
B 1639.3
(3)
P 		1368.7
(-0.2)
P 		1177.5
(-2.5)
P 		1157.7
(-2.7)
P 		1135.1
(-3)
P 		1144
(-2.9)
P 		504
C 1311.4
(2.7)
P 		1310.3
(2.7)
P 		1104.7
(-0.7)
P 		964.7
(-3)
P 		1027.4
(-2)
P 		1327
(3)
P 		362
avr 1582.4
(3) 		1329.3
(0.2) 		1145.3
(-1.9) 		1045.2
(-3) 		1104
(-2.3) 		1223.2
(-1) 		537
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 618
1 2 3 4 range
A 615.4
(3)
P 		551.5
(2.2)
P 		583.6
(2.6)
P 		114.7
(-3)
P 		501
B 571.8
(3)
P 		537.4
(2.5)
P 		566.1
(2.9)
P 		137.7
(-3)
P 		434
C 526.5
(1)
P 		608.7
(1.8)
P 		732.3
(3)
P 		121
(-3)
P 		611
avr 571.2
(2.3) 		565.9
(2.3) 		627.3
(3) 		124.5
(-3) 		503

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 331.2
(-0.8)
P 		465.5
(3)
P 		251.3
(-3)
P 		256.9
(-2.8)
P 		346.9
(-0.3)
P 		291.9
(-1.9)
P 		214
B 570.4
(3)
P 		455.6
(0.6)
P 		285.9
(-3)
P 		306.6
(-2.6)
P 		461.2
(0.7)
P 		426.6
(-0)
P 		285
C 486.1
(3)
P 		399.8
(1.2)
P 		281.2
(-1.2)
P 		194
(-3)
P 		332.4
(-0.2)
P 		444.2
(2.1)
P 		292
avr 462.6
(3) 		440.3
(2.4) 		272.8
(-2.4) 		252.5
(-3) 		380.2
(0.6) 		387.6
(0.9) 		210
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185210_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15165
Sequence Type Exemplar sequence
Representative Public ID K11D12.5 NCBI
Target Description K11D12.5 /REP_DB=WormBase Gene ID /WP=CE12134 /TR=O44620 /GB=AAB94225.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071948(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071948 NCBI Caenorhabditis elegans K11D12.5 (K11D12.5) mRNA, complete cds. 11/11 None
SNAP00000023422 ENSEMBL cdna:SNAP chromosome:CEL140:V:5029258:5030620:-1 11/11 None
GENEFINDER00000023438 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5029258:5030620:-1 11/11 None
K11D12.5 ENSEMBL cdna:known chromosome:CEL140:V:5029207:5030620:-1 gene:K11D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5029257-5030620(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K11D12.5
Entrez Gene 178890 Entrez gene
SwissProt O44620 EMBL-EBI
WormBase CE12134 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504349 K11D12.5 [Caenorhabditis elegans] gb|AAB94225.1| Hypothetical protein K11D12.5 [Caenorhabditis elegans] 1.0E-109
blast CAE64049 Hypothetical protein CBG08648 [Caenorhabditis briggsae] 1.0E-102
blast CAE66183 Hypothetical protein CBG11421 [Caenorhabditis briggsae] 1.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR004316 EMBL-EBI MtN3 and saliva related transmembrane protein 1.6E-31
Pfam IPR004316 EMBL-EBI MtN3 and saliva related transmembrane protein 1.1E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504349.1 6 5-27,65-84,91-110,120-139,152-174,179-201
K11D12.5 6 5-27,65-84,91-110,120-139,152-174,179-201
SNAP00000023422 6 5-27,65-84,91-110,120-139,152-174,179-201
GENEFINDER00000023438 6 5-27,65-84,91-110,120-139,152-174,179-201
Sequence
Target Sequence 
>C. ELEGANS:185210_S_AT
tcacattcctgcccatgtttatggtgctcgactggcacaagagaggcactgccgatggat
tcagttcagtcaactttgttcttccgatgcttgtacaatcgttctggctccgtcacggtt
atatgacaaacgatcagaccaacatcatcatcaactctatcaatttggtcttctttgctt
tttatgtttccgcgttcgcatactatcagccaaaaaggaaatacctcattggtcaaattg
ttgctgccgctcttgccgtcaaagttgcctttgcctacgtcgacacccacgactctgctt
caatcaacgacgctatgggatccatggctgctggagcacagatcttcagtttagttggag
gaatctacgaaattaagcgcgcaatctccatgggcaccactgagtacattccagctggtt
tccagttcgccattttcacattgatccttcagtggcttctgttcggaattctccatggaa
atcagtttatcgctatttccaacgctgctggtctcctcgtcaacattgccacgttggcat
tgtacttcttctatccacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACATTCCTGCCCATGTTTATGGT 460 627 62 Antisense
GTTCAGTCAACTTTGTTCTTCCGAT 168 445 125 Antisense
GTTCTGGCTCCGTCACGGTTATATG 451 443 162 Antisense
ATGTTTCCGCGTTCGCATACTATCA 359 47 245 Antisense
GACTCTGCTTCAATCAACGACGCTA 83 375 352 Antisense
GACGCTATGGGATCCATGGCTGCTG 376 381 370 Antisense
AATCTCCATGGGCACCACTGAGTAC 312 165 444 Antisense
GAGTACATTCCAGCTGGTTTCCAGT 311 399 463 Antisense
TCCAGTTCGCCATTTTCACATTGAT 275 591 482 Antisense
AGTGGCTTCTGTTCGGAATTCTCCA 90 59 512 Antisense
TGGCATTGTACTTCTTCTATCCACC 35 547 596 Antisense
Sequence Source Affymetrix Proprietary Database