[Home] | [Total List]

[185209_at]

Description F59E11.4 /REP_DB=WormBase Gene ID /WP=CE11502 /TR=O16762 /GB=AAG24140.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 08      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 3.8
(-3)
A 		9.2
(-2.2)
A 		37.9
(1.8)
A 		46
(3)
A 		42
B 4.5
(-3)
A 		6.7
(-2.7)
A 		17.4
(-1)
A 		43.9
(3)
A 		39
C 5.3
(-2.8)
A 		5.8
(-2.8)
A 		4.5
(-3)
A 		35.7
(3)
A 		31
avr 4.5
(-3) 		7.2
(-2.6) 		19.9
(-0.5) 		41.9
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 44.9
(3)
A 		18.2
(-1)
A 		45
(3)
P 		6.6
(-2.7)
A 		4.9
(-2.9)
A 		4.5
(-3)
A 		41
B 24.1
(-0.6)
A 		5.7
(-2.8)
A 		16.9
(-1.5)
A 		54
(3)
A 		6.7
(-2.7)
A 		4.4
(-3)
A 		50
C 3.3
(-2.9)
A 		33.9
(3)
A 		11.3
(-1.4)
A 		9.6
(-1.7)
A 		2.9
(-3)
A 		5
(-2.6)
A 		31
avr 24.1
(2.9) 		19.3
(1.5) 		24.4
(3) 		23.4
(2.7) 		4.8
(-2.9) 		4.6
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.4
(-3)
A 		2
(-2.6)
A 		9.9
(3)
A 		6.7
(0.7)
A 		9
B 1.4
(-3)
A 		1.7
(-2.8)
A 		4
(-1.1)
A 		9.4
(3)
A 		8
C 1.8
(-2.7)
A 		1.7
(-2.9)
A 		1.6
(-3)
A 		6
(3)
A 		4
avr 1.5
(-3) 		1.8
(-2.7) 		5.2
(0.8) 		7.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 8.3
(2)
A 		6.5
(0.7)
A 		9.8
(3)
P 		1.7
(-2.6)
A 		1.5
(-2.7)
A 		1.1
(-3)
A 		9
B 8.4
(0.2)
A 		1.9
(-2.9)
A 		4.1
(-1.8)
A 		14.3
(3)
A 		2.7
(-2.5)
A 		1.6
(-3)
A 		13
C 1.2
(-2.8)
A 		10.3
(3)
A 		2.9
(-1.7)
A 		1.9
(-2.4)
A 		0.9
(-3)
A 		1.7
(-2.5)
A 		9
avr 6
(2.7) 		6.2
(3) 		5.6
(2.2) 		6
(2.7) 		1.7
(-2.7) 		1.5
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185209_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11716
Sequence Type Exemplar sequence
Representative Public ID F59E11.4 NCBI
Target Description F59E11.4 /REP_DB=WormBase Gene ID /WP=CE11502 /TR=O16762 /GB=AAG24140.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F59E11.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F59E11.4 F59E11.4 /REP_DB=WormBase Gene ID /WP=CE11502 /TR=O16762 /GB=AAG24140.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Sequence
Target Sequence 
>C. ELEGANS:185209_AT
attcttaaggcattctcctccaactctccaaagttctacgcccacctttacaaaacctat
gtagctcctatcatgaattattgctctgaaatctatgctccctccccaaactcattgctt
tcagcaaaatttgaaaaacctcttaggcactttacgaagatcgttcttcaaaggtgtaat
acgaaattccgctcttatgaaaaccgactgagtataatggaactccactccaccagacac
aatataattaaggctcaattgaaattactctatagacttttaacagttagaaaggacaaa
ttctccacgcatttcttttcacatatcatccctgtttggaacaatttgttcaaaaatgtg
acagtttttatgtcccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTTAAGGCATTCTCCTCCAACT 227 11 31 Antisense
GCCCACCTTTACAAAACCTATGTAG 430 285 70 Antisense
AAAACCTATGTAGCTCCTATCATGA 559 131 82 Antisense
AGCTCCTATCATGAATTATTGCTCT 388 81 93 Antisense
TGAAAAACCTCTTAGGCACTTTACG 207 571 162 Antisense
AGGCACTTTACGAAGATCGTTCTTC 84 53 175 Antisense
GGTGTAATACGAAATTCCGCTCTTA 197 495 203 Antisense
ATTCCGCTCTTATGAAAACCGACTG 547 5 216 Antisense
TGAGTATAATGGAACTCCACTCCAC 636 567 239 Antisense
TTCACATATCATCCCTGTTTGGAAC 19 687 348 Antisense
AAATGTGACAGTTTTTATGTCCCCA 488 119 384 Antisense
Sequence Source Affymetrix Proprietary Database