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[185207_at]

Description F01E11.2 /REP_DB=WormBase Gene ID /WP=CE04328 /TR=Q19081 /GB=AAA83571.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 03      4grp_high_8_8 > 18      6grp_total > 24      4grp_total > 38      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 146.6
(2.4)
P 		85.8
(-1.8)
A 		69.5
(-3)
A 		154.4
(3)
P 		85
B 165.8
(3)
P 		135.4
(1.3)
P 		58
(-3)
A 		63.2
(-2.7)
A 		108
C 177
(3)
P 		73.5
(-2.3)
P 		60.6
(-3)
P 		132.4
(0.7)
P 		116
avr 163.1
(3) 		98.2
(-0.9) 		62.7
(-3) 		116.7
(0.2) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 174
1 2 3 4 5 6 range
A 202.2
(3)
P 		126.7
(-0.1)
P 		88.4
(-1.6)
P 		79.3
(-2)
P 		56.5
(-2.9)
P 		54.4
(-3)
P 		148
B 152.9
(3)
P 		136.1
(1.9)
P 		129.7
(1.5)
P 		92.4
(-1)
A 		62.5
(-3)
P 		66
(-2.8)
A 		90
C 113.3
(0.9)
P 		159.2
(3)
P 		130.6
(1.7)
P 		68.9
(-1.1)
A 		27.9
(-3)
P 		67.1
(-1.2)
P 		131
avr 156.1
(3) 		140.7
(2.1) 		116.2
(0.8) 		80.2
(-1.3) 		49
(-3) 		62.5
(-2.2) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 53.4
(3)
P 		18.6
(-2.9)
A 		18.2
(-3)
A 		22.6
(-2.3)
P 		35
B 52.9
(3)
P 		33.4
(0)
P 		13.4
(-3)
A 		13.5
(-3)
A 		40
C 58.6
(3)
P 		21.1
(-3)
P 		21.1
(-3)
P 		22.3
(-2.8)
P 		38
avr 55
(3) 		24.4
(-1.9) 		17.6
(-3) 		19.5
(-2.7) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 37.3
(1.5)
P 		45.1
(3)
P 		19.2
(-1.9)
P 		20.1
(-1.7)
P 		17
(-2.3)
P 		13.3
(-3)
P 		32
B 53.2
(3)
P 		45.3
(1.3)
P 		31.5
(-1.5)
P 		24.5
(-3)
A 		25.4
(-2.8)
P 		24.6
(-3)
A 		29
C 42
(2)
P 		48.6
(3)
P 		33.2
(0.7)
P 		13.9
(-2.3)
A 		9
(-3)
P 		22.5
(-1)
P 		40
avr 44.2
(2.6) 		46.3
(3) 		28
(-0.8) 		19.5
(-2.5) 		17.1
(-3) 		20.1
(-2.4) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185207_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16790
Sequence Type Exemplar sequence
Representative Public ID F01E11.2 NCBI
Target Description F01E11.2 /REP_DB=WormBase Gene ID /WP=CE04328 /TR=Q19081 /GB=AAA83571.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076779(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076779 NCBI Caenorhabditis elegans F01E11.3 (F01E11.3) mRNA, complete cds. 11/11 None
GENEFINDER00000033567 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6980733:6990591:1 9/11 None
F01E11.3 ENSEMBL cdna:known chromosome:CEL140:X:6967667:6983052:1 gene:F01E11.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033563 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6980732-6982916(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01E11.3
Entrez Gene 184061 Entrez gene
SwissProt Q5WRR7 EMBL-EBI
WormBase CE37625 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAV28357 Hypothetical protein F01E11.3 [Caenorhabditis elegans] ref|NP_509180.2| F01E11.3 [Caenorhabditis elegans] 0.0
blast T15938 hypothetical protein F01E11.2 - Caenorhabditis elegans 1.0E-109
blast AAV28357 Hypothetical protein F01E11.3 [Caenorhabditis elegans] ref|NP_509180.2| F01E11.3 [Caenorhabditis elegans] 1.0E-72
blast T15938 hypothetical protein F01E11.2 - Caenorhabditis elegans 1.0E-72
blast T15937 hypothetical protein F01E11.3 - Caenorhabditis elegans 4.0E-62
blast CAE65826 Hypothetical protein CBG10947 [Caenorhabditis briggsae] 1.0E-12
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509180.2 1 95-117
F01E11.3 1 95-117
Sequence
Target Sequence 
>C. ELEGANS:185207_AT
cacttccatcatcttttggtccagttggtgttgatatgcgtaacacggatgttgaaaccg
ccgcgcaacgtgttgtcgaagcgaaaagtgagaaaaagagacgaaaaactaagattggtc
ccattaccgctgtcacatccaccacgaccaccattaccacgaatgagcaagaaagaaaag
ctgaggaaattagtggagtgagcagtgttacgacaacgtccactcaagagttagatgagt
ttgatgttgccaatttaccagagactacattgaaaataaccaagaagaaaaaggggaaag
aagaaagtgacgtaaaaagtgaaccggaatccgattatggtagtagtttggaagatgaaa
agccaaatgaggatgaaggagtggcacaagaaattcatgaagaagttcgaacaagaccaa
tgacagcaaaaaagcaacggacttctttgtttggaggcaacgggatttctcctcttcctg
ttcaaccaagggcgtggactgtgtatcaagccggtgatagagttgcagctttctggaata
ataatcaaatgcatagtcatccaacgcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTTCCATCATCTTTTGGTCCAGT 306 197 149 Antisense
AACACGGATGTTGAAACCGCCGCGC 531 125 190 Antisense
CGCCGCGCAACGTGTTGTCGAAGCG 117 255 207 Antisense
CTAAGATTGGTCCCATTACCGCTGT 76 227 257 Antisense
ACGACCACCATTACCACGAATGAGC 317 93 292 Antisense
GTGTTACGACAACGTCCACTCAAGA 229 483 353 Antisense
GTTGCCAATTTACCAGAGACTACAT 21 441 394 Antisense
GCAACGGACTTCTTTGTTTGGAGGC 353 319 582 Antisense
TGGAGGCAACGGGATTTCTCCTCTT 660 549 600 Antisense
CGTGGACTGTGTATCAAGCCGGTGA 121 245 641 Antisense
CAAATGCATAGTCATCCAACGCCTT 407 193 694 Antisense
Sequence Source Affymetrix Proprietary Database