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[185206_s_at]

Description Y55D9A.2A /REP_DB=WormBase Gene ID /WP=CE19235 /TR=Q9XWG6 /GB=CAA21702.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 66      6grp_total > 67      4grp_total > 15      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 130.3
(3)
P 		66.3
(-3)
A 		77.4
(-2)
A 		102.6
(0.4)
A 		64
B 115.9
(0.4)
P 		61.1
(-3)
A 		68.8
(-2.5)
A 		156.6
(3)
P 		96
C 180.4
(3)
P 		10.2
(-3)
A 		92.8
(-0.1)
P 		112.5
(0.6)
P 		170
avr 142.2
(3) 		45.9
(-3) 		79.7
(-0.9) 		123.9
(1.9) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 157.9
(-1.4)
A 		134.3
(-2.2)
M 		109.8
(-3)
P 		149.9
(-1.7)
P 		111.6
(-2.9)
P 		291.9
(3)
P 		182
B 142.8
(-0.7)
P 		70.9
(-3)
A 		101.2
(-2)
P 		126.2
(-1.2)
P 		161.7
(-0.1)
P 		259.2
(3)
P 		188
C 117.2
(-2.1)
P 		72.9
(-3)
P 		180.4
(-0.9)
P 		174.6
(-1)
P 		135.2
(-1.8)
P 		384.3
(3)
P 		311
avr 139.3
(-1.7) 		92.7
(-3) 		130.5
(-2) 		150.2
(-1.4) 		136.2
(-1.8) 		311.8
(3) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 47.4
(3)
P 		14.4
(-3)
A 		20.2
(-1.9)
A 		15
(-2.9)
A 		33
B 37
(3)
P 		15.1
(-3)
A 		15.9
(-2.8)
A 		33.4
(2)
P 		22
C 59.7
(3)
P 		2.9
(-3)
A 		32.3
(0.1)
P 		19
(-1.3)
P 		57
avr 48
(3) 		10.8
(-3) 		22.8
(-1.1) 		22.5
(-1.1) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 29.1
(-2.3)
A 		47.8
(0)
M 		23.9
(-3)
P 		38
(-1.2)
P 		33.7
(-1.8)
P 		71.1
(3)
P 		47
B 49.7
(-0.9)
P 		23.6
(-3)
A 		24.6
(-2.9)
P 		33.4
(-2.2)
P 		65.7
(0.5)
P 		96.6
(3)
P 		73
C 43.4
(-1.8)
P 		22.2
(-3)
P 		45.9
(-1.7)
P 		35.1
(-2.3)
P 		43.8
(-1.8)
P 		128.6
(3)
P 		106
avr 40.7
(-2.2) 		31.2
(-3) 		31.5
(-3) 		35.5
(-2.6) 		47.7
(-1.5) 		98.8
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185206_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10050
Sequence Type Exemplar sequence
Representative Public ID Y55D9A.2A NCBI
Target Description Y55D9A.2A /REP_DB=WormBase Gene ID /WP=CE19235 /TR=Q9XWG6 /GB=CAA21702.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070013(11), NM_070014(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070013 NCBI Caenorhabditis elegans Y55D9A.2a (Y55D9A.2) mRNA, complete cds. 11/11 A 
NM_070014 NCBI Caenorhabditis elegans Y55D9A.2b (Y55D9A.2) mRNA, complete cds. 11/11 A 
SNAP00000027792 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12601587:12605275:-1 11/11 None
GENEFINDER00000027795 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12600745:12605284:-1 11/11 None
Y55D9A.2a ENSEMBL cdna:known chromosome:CEL140:IV:12601099:12605338:-1 gene:Y55D9A.2 11/11 A 
Y55D9A.2b ENSEMBL cdna:known chromosome:CEL140:IV:12601452:12605396:-1 gene:Y55D9A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12601276-12605297(-) 95.28 99.88
Public Domain and Genome References
Ensembl Y55D9A.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21702 Hypothetical protein Y55D9A.2a [Caenorhabditis elegans] ref|NP_502414.1| Y55D9A.2a [Caenorhabditis elegans] 0.0
blast CAA21703 Hypothetical protein Y55D9A.2b [Caenorhabditis elegans] ref|NP_502415.1| Y55D9A.2b [Caenorhabditis elegans] 0.0
blast CAE67916 Hypothetical protein CBG13513 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 2.3E-21
Pfam IPR000467 EMBL-EBI D111/G-patch domain 2.3E-21
Pfam IPR000467 EMBL-EBI D111/G-patch domain 2.3E-21
Sequence
Target Sequence 
>C. ELEGANS:185206_S_AT
caatacttgccctggatgtgagcccggcctccaacaaggcgacgatgacattgcaccggt
tactacagtacccgcaaagaatattcgtggagaagttgcgagacgaaaaaacctgaaaca
aatgatgaagtcctatggtattcgaccggatgatgtgctcagcgagccgataaggaaacg
accggccactggaccatcagagatgaatattcatagatcagaagctccgggttcctcttc
tgatatgtatggatcttgtgcagcaaagccaatgccagaaggtcagcgaaagtttgatct
tccgtccacgtcagcggctgtagcagcagcagcagcaccaaaacccctagattctggaaa
tgttggcttcaaacttctgaaatcaatgggttggagtgaaggtcaaggactcggaaaaga
gaaacaaggacacgtggaaccagtggcaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATACTTGCCCTGGATGTGAGCCC 184 181 1080 Antisense
CCGGCCTCCAACAAGGCGACGATGA 480 265 1103 Antisense
GACATTGCACCGGTTACTACAGTAC 520 369 1126 Antisense
GGTATTCGACCGGATGATGTGCTCA 594 505 1216 Antisense
GATAAGGAAACGACCGGCCACTGGA 418 419 1248 Antisense
CATAGATCAGAAGCTCCGGGTTCCT 651 209 1291 Antisense
CGGGTTCCTCTTCTGATATGTATGG 158 243 1307 Antisense
CAGCGAAAGTTTGATCTTCCGTCCA 230 101 1363 Antisense
CCACGTCAGCGGCTGTAGCAGCAGC 318 275 1385 Antisense
CAGCACCAAAACCCCTAGATTCTGG 182 203 1412 Antisense
GGACACGTGGAACCAGTGGCAACTG 322 525 1507 Antisense
Sequence Source Affymetrix Proprietary Database