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[185205_at]

Description C18A11.6 /REP_DB=WormBase Gene ID /WP=CE04037 /TR=Q18063 /GB=AAC69010.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 155
1 2 3 4 range
A 74.7
(-3)
A 		104.5
(-1.6)
A 		172.2
(1.6)
A 		202.8
(3)
A 		128
B 51
(-2.8)
A 		48
(-3)
A 		89.6
(0.4)
P 		122.1
(3)
P 		74
C 70.1
(-3)
A 		96.9
(-1.4)
A 		74
(-2.8)
A 		167.8
(3)
P 		98
avr 65.3
(-3) 		83.1
(-1.9) 		111.9
(-0.2) 		164.2
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 22.2
(-3)
A 		61.3
(-0)
A 		93.5
(2.4)
A 		49.9
(-0.9)
A 		101.7
(3)
A 		23.5
(-2.9)
A 		80
B 111.3
(3)
P 		55.2
(-0.4)
A 		84.1
(1.3)
A 		12.4
(-3)
A 		76.7
(0.9)
A 		45.7
(-1)
A 		99
C 59.2
(-1.2)
P 		136.4
(3)
A 		32.8
(-2.7)
A 		51.8
(-1.6)
A 		26.4
(-3)
A 		85.3
(0.2)
A 		110
avr 64.2
(0.4) 		84.3
(3) 		70.1
(1.2) 		38
(-3) 		68.3
(0.9) 		51.5
(-1.3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 27.2
(-1.8)
A 		22.7
(-3)
A 		45
(3)
A 		29.7
(-1.1)
A 		22
B 16.3
(-1.1)
A 		11.9
(-3)
A 		20.8
(0.8)
P 		26
(3)
P 		14
C 23.2
(-3)
A 		27.9
(2.5)
A 		25.8
(0.1)
A 		28.3
(3)
P 		5
avr 22.2
(-2.1) 		20.8
(-3) 		30.5
(3) 		28
(1.5) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 4.1
(-3)
A 		21.8
(1)
A 		20.4
(0.7)
A 		12.7
(-1.1)
A 		30.7
(3)
A 		5.7
(-2.6)
A 		27
B 38.7
(3)
P 		18.4
(-0.4)
A 		20.4
(-0.1)
A 		3.3
(-3)
A 		31.2
(1.7)
A 		17
(-0.7)
A 		35
C 21.9
(-0.5)
P 		41.6
(3)
A 		8.3
(-3)
A 		10.4
(-2.6)
A 		8.5
(-3)
A 		28.6
(0.7)
A 		33
avr 21.6
(1.2) 		27.3
(3) 		16.4
(-0.5) 		8.8
(-3) 		23.5
(1.8) 		17.1
(-0.3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185205_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16086
Sequence Type Exemplar sequence
Representative Public ID C18A11.6 NCBI
Target Description C18A11.6 /REP_DB=WormBase Gene ID /WP=CE04037 /TR=Q18063 /GB=AAC69010.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076951(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076951 NCBI Caenorhabditis elegans C18A11.6 (C18A11.6) mRNA, complete cds. 11/11 None
C18A11.6 ENSEMBL cdna:known chromosome:CEL140:X:8033312:8034757:-1 gene:C18A11.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023784 5/11 Cross Hyb Matching Probes None
GENEFINDER00000023796 3/11 Cross Hyb Matching Probes None
SNAP00000023785 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8033310-8034756(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C18A11.6
Entrez Gene 182762 Entrez gene
SwissProt Q18063 EMBL-EBI
WormBase CE04037 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69010 Hypothetical protein C18A11.6 [Caenorhabditis elegans] ref|NP_509352.1| C18A11.6 [Caenorhabditis elegans] 6.0E-86
blast CAB07358 Hypothetical protein F11A5.6 [Caenorhabditis elegans] ref|NP_507086.1| F11A5.6 [Caenorhabditis elegans] 6.0E-13
Sequence
Target Sequence 
>C. ELEGANS:185205_AT
tgagaaacggcgagccttacggcgtcgaccggcttgcacccgttcttgcgggagaagtgc
tgagaaatcttggattcacgtcgccgtgtgcgcaaggcaccgaaagtgcgtcaacaagat
cgcaaggctttgaaggtagaagtcgtgcctcagccagacgttgtggcgacttttcgatag
atgatgcaagcatttctttcgcaactgcaaatgagacgagagccagtacaatctcagcgt
caaacttgggtagcagccctgccaatgtcaaagtcaaaaaggctaacaaagaagcaaaaa
aggccgaaaaattagctaaaaagctggaagaagataaccttattgaacaagcacgacttg
acaatgtggagttgtttaagtttaatagagaaatctctgattctctctgccattatagcc
gcaatgtccggctacacaggctcagatatctaggactacaggaaagtggctacggaattt
tgtccggtattcaacttgccattgccacgtattatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGAAACGGCGAGCCTTACGGCGT 575 551 14 Antisense
AATCTTGGATTCACGTCGCCGTGTG 74 169 79 Antisense
GAAGGTAGAAGTCGTGCCTCAGCCA 474 333 145 Antisense
GCCTCAGCCAGACGTTGTGGCGACT 682 281 160 Antisense
GCAAGCATTTCTTTCGCAACTGCAA 299 321 199 Antisense
GAGCCAGTACAATCTCAGCGTCAAA 178 385 233 Antisense
GTCAAACTTGGGTAGCAGCCCTGCC 178 465 252 Antisense
CAGCCCTGCCAATGTCAAAGTCAAA 376 203 267 Antisense
TCTGATTCTCTCTGCCATTATAGCC 218 607 409 Antisense
TTTTGTCCGGTATTCAACTTGCCAT 556 675 491 Antisense
AACTTGCCATTGCCACGTATTATAG 543 137 506 Antisense
Sequence Source Affymetrix Proprietary Database