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[185202_s_at]

Description C46F11.5A /REP_DB=WormBase Gene ID /WP=CE08776 /TR=Q93383 /GB=CAB03762.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 08      4grp_high_8_8 > 09      6grp_total > 09      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 489.3
(3)
P 		207.6
(-3)
P 		291.1
(-1.2)
P 		390.5
(0.9)
M 		282
B 528.3
(3)
P 		332.6
(-1)
P 		237.6
(-3)
P 		390.6
(0.2)
P 		291
C 365.2
(1.2)
P 		325.8
(-0.9)
P 		285
(-3)
P 		400
(3)
P 		115
avr 460.9
(3) 		288.7
(-2.4) 		271.2
(-3) 		393.7
(0.9) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 548.8
(3)
P 		382.4
(-1.1)
P 		313.3
(-2.8)
P 		529
(2.5)
P 		306.1
(-3)
P 		309.5
(-2.9)
P 		243
B 404.2
(3)
P 		301.4
(-0.6)
P 		235.1
(-3)
M 		345.9
(0.9)
P 		346.4
(0.9)
P 		327.7
(0.3)
P 		169
C 372.2
(1.5)
P 		380
(1.9)
P 		318.4
(-0.7)
P 		264.3
(-3)
P 		406.6
(3)
P 		266.1
(-2.9)
P 		142
avr 441.7
(3) 		354.6
(-0.4) 		288.9
(-3) 		379.7
(0.6) 		353
(-0.5) 		301.1
(-2.5) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 178.1
(3)
P 		45.1
(-3)
P 		76.1
(-1.6)
P 		57.2
(-2.5)
M 		133
B 168.5
(3)
P 		82.1
(-1.6)
P 		55
(-3)
P 		83.2
(-1.5)
P 		114
C 120.9
(3)
P 		93.7
(-0.1)
P 		99.3
(0.6)
P 		67.5
(-3)
P 		53
avr 155.8
(3) 		73.6
(-2.7) 		76.8
(-2.5) 		69.3
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 101.2
(-0.1)
P 		136
(3)
P 		68.2
(-3)
P 		134.2
(2.8)
P 		92.4
(-0.9)
P 		75.4
(-2.4)
P 		68
B 140.6
(3)
P 		100.3
(0.1)
P 		57.1
(-3)
M 		91.6
(-0.5)
P 		140.7
(3)
P 		122.2
(1.7)
P 		84
C 138
(3)
P 		116
(1.4)
P 		81
(-1)
P 		53.2
(-3)
P 		131.6
(2.5)
P 		89.1
(-0.5)
P 		85
avr 126.6
(3) 		117.4
(2) 		68.8
(-3) 		93
(-0.5) 		121.6
(2.5) 		95.6
(-0.2) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185202_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7398
Sequence Type Exemplar sequence
Representative Public ID C46F11.5A NCBI
Target Description C46F11.5A /REP_DB=WormBase Gene ID /WP=CE08776 /TR=Q93383 /GB=CAB03762.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065341(11), NM_065340(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065341 NCBI Caenorhabditis elegans C46F11.5a (C46F11.5) mRNA, complete cds. 11/11 None
NM_065340 NCBI Caenorhabditis elegans C46F11.5b (C46F11.5) mRNA, complete cds. 11/11 None
SNAP00000037472 ENSEMBL cdna:SNAP chromosome:CEL140:III:3653060:3657482:-1 9/11 None
GENEFINDER00000037476 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3653060:3664276:-1 11/11 None
C46F11.5a ENSEMBL cdna:known chromosome:CEL140:III:3652845:3657580:-1 gene:C46F11.5 11/11 None
C46F11.5b ENSEMBL cdna:known chromosome:CEL140:III:3652924:3657479:-1 gene:C46F11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3653059-3657479(-) 100.0 100.0
Public Domain and Genome References
Ensembl C46F11.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03762 Hypothetical protein C46F11.5a [Caenorhabditis elegans] ref|NP_497742.2| C46F11.5a [Caenorhabditis elegans] 0.0
blast CAB03764 Hypothetical protein C46F11.5b [Caenorhabditis elegans] ref|NP_497741.2| C46F11.5b [Caenorhabditis elegans] 0.0
blast CAE64943 Hypothetical protein CBG09774 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 7.4E-33
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 2.1E-84
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497742.2 1 21-43
NP_497741.2 1 21-43
C46F11.5a 1 21-43
C46F11.5b 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:185202_S_AT
taagggattcctattgtgccaatttgaaaaactccgttgctggctccgcgacacccttca
tcgaattgcaatttccgtgcgagactcgattctctggccaatttgttgtctgatggttga
ggtggggaagcaggtctcgatttttgtgtaccacttgctcctggagcccattgtaaatta
tctccatagtcgatataaaatcatcgagacaagtgcattaatccacgtaattggcccagt
ctgtgagacagttatcgatcatattcccgagaaaaatccattttgtgaagaaagcgatgt
ggaactcgaaggatttcttccagaagtgaacgatgaaaccgatctcgatgagaatcatgt
ggatgatgatgataatgaagatattcaatcggaattgtcttcttcgccgattccagaaga
agaattcgaattcgaacgaggtcttcaattctcagcaatcaatggatcggaatccagtga
tgaggaattcgatttggatgctccgaaaaaaaccatccgacggaggcgacgagaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAGGGATTCCTATTGTGCCAATTT 523 637 945 Antisense
TCATCGAATTGCAATTTCCGTGCGA 559 621 1002 Antisense
TTCCGTGCGAGACTCGATTCTCTGG 466 697 1017 Antisense
GATTCTCTGGCCAATTTGTTGTCTG 654 431 1032 Antisense
GGGAAGCAGGTCTCGATTTTTGTGT 518 493 1069 Antisense
CCACTTGCTCCTGGAGCCCATTGTA 304 275 1095 Antisense
AATCCACGTAATTGGCCCAGTCTGT 630 167 1164 Antisense
GAGACAGTTATCGATCATATTCCCG 536 393 1189 Antisense
TCAATCGGAATTGTCTTCTTCGCCG 440 631 1329 Antisense
GAACGAGGTCTTCAATTCTCAGCAA 36 347 1378 Antisense
ACCATCCGACGGAGGCGACGAGAAC 100 87 1456 Antisense
Sequence Source Affymetrix Proprietary Database