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[185200_at]

Description AH9.4 /REP_DB=WormBase Gene ID /WP=CE03860 /TR=SW:Q10907 /GB=AAA82442.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 09      6grp_total > 03      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 129.1
(3)
P 		73.6
(-0.8)
A 		41.8
(-3)
A 		106.9
(1.5)
P 		87
B 119
(3)
P 		60.6
(-3)
A 		61.9
(-2.9)
P 		95.7
(0.6)
P 		58
C 136.6
(3)
P 		62.6
(-2)
P 		48.4
(-3)
P 		112.2
(1.3)
P 		88
avr 128.2
(3) 		65.6
(-1.8) 		50.7
(-3) 		104.9
(1.2) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 98.1
(3)
A 		58.6
(-0.9)
P 		60.4
(-0.7)
A 		48.6
(-1.9)
A 		78.7
(1.1)
P 		37.6
(-3)
A 		61
B 88
(3)
P 		69
(1.3)
P 		19.8
(-3)
A 		54.3
(0)
A 		49.7
(-0.4)
P 		48
(-0.5)
M 		68
C 59.9
(-1)
P 		98
(3)
P 		54.1
(-1.6)
A 		76.8
(0.8)
M 		45.8
(-2.5)
P 		40.6
(-3)
P 		57
avr 82
(3) 		75.2
(2) 		44.8
(-2.6) 		59.9
(-0.3) 		58.1
(-0.6) 		42.1
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 47
(3)
P 		16
(-2.2)
A 		10.9
(-3)
A 		15.6
(-2.2)
P 		36
B 38
(3)
P 		15
(-2.8)
A 		14.3
(-3)
P 		20.4
(-1.5)
P 		24
C 45.2
(3)
P 		18
(-2.8)
P 		16.9
(-3)
P 		18.9
(-2.6)
P 		28
avr 43.4
(3) 		16.3
(-2.5) 		14
(-3) 		18.3
(-2.1) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 18.1
(0.7)
A 		20.8
(1.8)
P 		13.2
(-1.3)
A 		12.3
(-1.7)
A 		23.7
(3)
P 		9.2
(-3)
A 		15
B 30.6
(3)
P 		23
(1.2)
P 		4.8
(-3)
A 		14.4
(-0.8)
A 		20.2
(0.6)
P 		17.9
(0)
M 		26
C 22.2
(0.2)
P 		29.9
(3)
P 		13.8
(-2.9)
A 		15.4
(-2.3)
M 		14.8
(-2.6)
P 		13.6
(-3)
P 		16
avr 23.6
(2.6) 		24.6
(3) 		10.6
(-3) 		14
(-1.5) 		19.6
(0.9) 		13.6
(-1.7) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185200_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18488
Sequence Type Exemplar sequence
Representative Public ID AH9.4 NCBI
Target Description AH9.4 /REP_DB=WormBase Gene ID /WP=CE03860 /TR=SW:Q10907 /GB=AAA82442.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076016(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076016 NCBI Caenorhabditis elegans AH9.4 (AH9.4) mRNA, complete cds. 11/11 None
SNAP00000004863 ENSEMBL cdna:SNAP chromosome:CEL140:X:2271236:2274279:-1 11/11 None
GENEFINDER00000004864 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2271236:2274330:-1 11/11 None
AH9.4 ENSEMBL cdna:known chromosome:CEL140:X:2271018:2274330:-1 gene:AH9.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2271235-2274364(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl AH9.4
Entrez Gene 181811 Entrez gene
SwissProt Q10907 EMBL-EBI
WormBase CE30841 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82442 Hypothetical protein AH9.4 [Caenorhabditis elegans] ref|NP_508417.2| AH9.4 [Caenorhabditis elegans] sp|Q10907|YWO4_CAEEL Probable G-protein coupled receptor AH9.4 0.0
blast CAE58897 Hypothetical protein CBG02145 [Caenorhabditis briggsae] 1.0E-174
blast AAA82442 Hypothetical protein AH9.4 [Caenorhabditis elegans] ref|NP_508417.2| AH9.4 [Caenorhabditis elegans] sp|Q10907|YWO4_CAEEL Probable G-protein coupled receptor AH9.4 1.0E-121
blast CAE58897 Hypothetical protein CBG02145 [Caenorhabditis briggsae] 1.0E-100
blast CAB01915 Hypothetical protein F54E4.2 [Caenorhabditis elegans] ref|NP_510432.1| F54E4.2 [Caenorhabditis elegans] 5.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508417.2 4 4-26,46-68,88-110,130-152
AH9.4 4 4-26,46-68,88-110,130-152
SNAP00000004863 4 4-26,46-68,88-110,130-152
Sequence
Target Sequence 
>C. ELEGANS:185200_AT
tttaagcacgttcatcttctcgacatctttcttttctacgcaatcccatctttgttacgg
atcacgttggattttctggttcttatccactgctattctccgttttcagtcgaaggattg
gatagggtgaccattgatcggagatatgctatcagtggtccagcgacaacgaagcggttt
tctcatacaggggaaacagatactttggacaataaagcacatgtcgctttggccatttca
ataactgccagtacgaatacaccgagcgtcaaacgaatacaccacggaaacccaaaaaag
aagacagcaatggtaatgagatcaatactaatttccgtgctcaacttgctattgaatctc
ccctcacacatcttccgagcttgggcttcgtacgacgagagcagcttggaaaatgaaatt
gtgcgaacattagaaccaatcgcacaaatgatgtacttctcgcagttcgcgtgtaatgct
ttctacttggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAAGCACGTTCATCTTCTCGACA 658 671 619 Antisense
TACGCAATCCCATCTTTGTTACGGA 1 649 655 Antisense
GGATCACGTTGGATTTTCTGGTTCT 479 509 677 Antisense
TTCTGGTTCTTATCCACTGCTATTC 244 695 692 Antisense
GCTATCAGTGGTCCAGCGACAACGA 257 303 766 Antisense
ATGTCGCTTTGGCCATTTCAATAAC 322 49 839 Antisense
ACTGCCAGTACGAATACACCGAGCG 265 97 862 Antisense
GATCAATACTAATTTCCGTGCTCAA 538 421 938 Antisense
TCAACTTGCTATTGAATCTCCCCTC 239 631 959 Antisense
TGTACTTCTCGCAGTTCGCGTGTAA 19 561 1070 Antisense
TCGCGTGTAATGCTTTCTACTTGGC 136 601 1085 Antisense
Sequence Source Affymetrix Proprietary Database