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[185199_s_at]

Description F07G11.9 /REP_DB=WormBase Gene ID /WP=CE09229 /TR=O16237 /GB=AAG24054.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 2.6
(-3)
A 		17.5
(-1.4)
A 		59.4
(3)
A 		23.9
(-0.8)
A 		57
B 6.7
(-3)
A 		8.9
(-2.6)
A 		9.9
(-2.4)
A 		38.1
(3)
A 		31
C 6.9
(-2.4)
A 		6.7
(-2.4)
A 		4.8
(-3)
A 		25.1
(3)
A 		20
avr 5.4
(-3) 		11
(-1.6) 		24.7
(1.9) 		29
(3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 5.6
(-3)
A 		7.8
(-2.8)
A 		10.9
(-2.4)
A 		60.5
(3)
A 		9.2
(-2.6)
A 		7.4
(-2.8)
A 		55
B 25.6
(2.8)
A 		26.2
(3)
A 		9.9
(-2.3)
A 		7.8
(-3)
A 		8.9
(-2.6)
A 		12.6
(-1.4)
A 		18
C 4.6
(-3)
A 		8.1
(-2.7)
A 		45.1
(0.6)
A 		72.1
(3)
A 		13.3
(-2.2)
A 		40.3
(0.2)
A 		68
avr 11.9
(-2.8) 		14
(-2.4) 		22
(-1.1) 		46.8
(3) 		10.5
(-3) 		20.1
(-1.4) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1
(-3)
A 		3.8
(-1.8)
A 		15.5
(3)
A 		3.5
(-2)
A 		15
B 2.1
(-3)
A 		2.2
(-2.9)
A 		2.3
(-2.8)
A 		8.1
(3)
A 		6
C 2.3
(-1.6)
A 		1.9
(-2.5)
A 		1.7
(-3)
A 		4.2
(3)
A 		3
avr 1.8
(-3) 		2.6
(-2) 		6.5
(3) 		5.3
(1.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1
(-3)
A 		2.8
(-2.2)
A 		2.4
(-2.4)
A 		15.3
(3)
A 		2.8
(-2.2)
A 		1.8
(-2.7)
A 		14
B 8.9
(3)
A 		8.7
(2.8)
A 		2.4
(-2.7)
A 		2.1
(-3)
A 		3.6
(-1.7)
A 		4.7
(-0.7)
A 		7
C 1.7
(-3)
A 		2.5
(-2.6)
A 		11.5
(1.6)
A 		14.5
(3)
A 		4.3
(-1.8)
A 		13.5
(2.5)
A 		13
avr 3.9
(-2.7) 		4.7
(-2.1) 		5.4
(-1.5) 		10.6
(3) 		3.6
(-3) 		6.7
(-0.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185199_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11745
Sequence Type Exemplar sequence
Representative Public ID F07G11.9 NCBI
Target Description F07G11.9 /REP_DB=WormBase Gene ID /WP=CE09229 /TR=O16237 /GB=AAG24054.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072461(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072461 NCBI Caenorhabditis elegans F07G11.9 (F07G11.9) mRNA, complete cds. 11/11 None
F07G11.9 ENSEMBL cdna:known chromosome:CEL140:V:7316729:7323602:-1 gene:F07G11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7316737-7323603(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F07G11.9
Entrez Gene 179121 Entrez gene
SwissProt O16237 EMBL-EBI
WormBase CE09229 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
16998 cell wall catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504862 F07G11.9 [Caenorhabditis elegans] gb|AAG24054.1| Hypothetical protein F07G11.9 [Caenorhabditis elegans] 0.0
blast T29861 hypothetical protein F10G2.5 - Caenorhabditis elegans 0.0
blast NP_504806 T01C4.1 [Caenorhabditis elegans] gb|AAB09177.1| Hypothetical protein T01C4.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.8E-11
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.4E-6
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 6.8E-14
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.4E-12
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.2E-14
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.4E-14
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.7E-10
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.8E-12
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 3.2E-13
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 1.9E-14
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 4.9E-6
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 5.5E-7
Pfam IPR002482 EMBL-EBI Peptidoglycan-binding LysM 2.0
Pfam IPR010264 EMBL-EBI Plant self-incompatibility S1 1.8E-11
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185199_S_AT
gtatgctacagatcgaaaccttggtggattgatgatctgggccttggatcttgatgacga
tgcagatacacttttgaatttagtatcttctgctgggctgtgctccggaggaaaaggtga
caaagttacatataaatgtgttccaattgacgacgttcgatggtggactcctgaaaattc
tgacgaaaagaagcaaggacaatgtggaaagtctgctccattgataaatggattttaccc
tgtctgtgacccagatgatccaggcttctcgtgttgtggagcagctggatattgcggaag
tggaaaagaatactgcgattgtaagggatgcgtgaactaccgcaaggatcccgattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATGCTACAGATCGAAACCTTGGT 169 453 5487 Antisense
GTGGATTGATGATCTGGGCCTTGGA 558 489 5510 Antisense
GGGCCTTGGATCTTGATGACGATGC 679 491 5525 Antisense
TTTAGTATCTTCTGCTGGGCTGTGC 395 673 5565 Antisense
CTGGGCTGTGCTCCGGAGGAAAAGG 420 239 5579 Antisense
AAATGTGTTCCAATTGACGACGTTC 212 121 5620 Antisense
ATGGTGGACTCCTGAAAATTCTGAC 36 51 5646 Antisense
AAATGGATTTTACCCTGTCTGTGAC 172 121 5712 Antisense
GTCTGTGACCCAGATGATCCAGGCT 520 471 5728 Antisense
TGATCCAGGCTTCTCGTGTTGTGGA 363 563 5742 Antisense
TGAACTACCGCAAGGATCCCGATTT 600 573 5819 Antisense
Sequence Source Affymetrix Proprietary Database