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[185198_at]

Description K09H11.1 /REP_DB=WormBase Gene ID /WP=CE21068 /TR=O01590 /GB=AAB52261.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 28      4grp_high_8_8 > 23      6grp_highest_nonorm > 50      6grp_total > 45      4grp_total > 0      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 402
1 2 3 4 range
A 522.9
(-1.8)
P 		461
(-3)
P 		592.1
(-0.4)
P 		761.1
(3)
P 		300
B 527.5
(-0.1)
P 		358.8
(-3)
P 		707.8
(3)
P 		641.6
(1.9)
P 		349
C 524.6
(-0.4)
P 		391.2
(-3)
P 		697.3
(3)
P 		607.8
(1.2)
P 		306
avr 525
(-0.3) 		403.7
(-3) 		665.7
(2.9) 		670.2
(3) 		267

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 670.1
(3)
P 		471.9
(0.2)
P 		612.9
(2.2)
P 		333
(-1.8)
P 		251.6
(-3)
P 		528.5
(1)
P 		419
B 615.9
(3)
P 		382.3
(-0.9)
P 		571.7
(2.3)
P 		347.2
(-1.5)
P 		254.5
(-3)
P 		568
(2.2)
P 		361
C 621.8
(2.2)
P 		468.6
(-0.4)
P 		534.6
(0.7)
P 		397.9
(-1.7)
P 		320.6
(-3)
P 		666.8
(3)
P 		346
avr 635.9
(3) 		440.9
(-0.2) 		573.1
(2) 		359.4
(-1.6) 		275.6
(-3) 		587.8
(2.2) 		360
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 190.4
(3)
P 		100.1
(-3)
P 		154.8
(0.6)
P 		111.4
(-2.2)
P 		90
B 168.2
(3)
P 		88.6
(-3)
P 		164
(2.7)
P 		136.7
(0.6)
P 		80
C 173.7
(0)
P 		112.5
(-2.6)
P 		243
(3)
P 		102.5
(-3)
P 		141
avr 177.4
(2.3) 		100.4
(-3) 		187.3
(3) 		116.9
(-1.9) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 123.5
(0.1)
P 		167.8
(3)
P 		133.5
(0.8)
P 		84.5
(-2.4)
P 		75.9
(-3)
P 		128.7
(0.4)
P 		92
B 214.3
(3)
P 		127.3
(-1.3)
P 		138.8
(-0.7)
P 		92
(-3)
P 		103.4
(-2.4)
P 		211.8
(2.9)
P 		122
C 230.5
(3)
P 		143
(-0.5)
P 		136.1
(-0.8)
P 		80
(-3)
P 		103.7
(-2.1)
P 		223.2
(2.7)
P 		151
avr 189.4
(3) 		146
(0.5) 		136.1
(-0.1) 		85.5
(-3) 		94.3
(-2.5) 		187.9
(2.9) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185198_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11951
Sequence Type Exemplar sequence
Representative Public ID K09H11.1 NCBI
Target Description K09H11.1 /REP_DB=WormBase Gene ID /WP=CE21068 /TR=O01590 /GB=AAB52261.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072107(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072107 NCBI Caenorhabditis elegans K09H11.1 (K09H11.1) mRNA, complete cds. 11/11 None
SNAP00000008373 ENSEMBL cdna:SNAP chromosome:CEL140:V:5750415:5754548:1 11/11 None
GENEFINDER00000008379 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5750415:5754548:1 11/11 None
K09H11.1 ENSEMBL cdna:known chromosome:CEL140:V:5750414:5754605:1 gene:K09H11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5750414-5754548(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09H11.1
Entrez Gene 178962 Entrez gene
SwissProt O01590 EMBL-EBI
WormBase CE21068 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:258525_AT acyl-CoA dehydrogenase-related at
ATH1-121501:258524_AT acyl-CoA dehydrogenase-related at
CANINE_2:CFAAFFX.13630.1.S1_AT similar to acyl-Coenzyme A dehydrogenase family, member 10 cfa
CANINE_2:CFAAFFX.13639.1.S1_S_AT similar to acyl-Coenzyme A dehydrogenase family, member 10 cfa
CHICKEN:GGAAFFX.2881.1.S1_AT similar to RIKEN cDNA 2410021P16 gga
HG-U133_PLUS_2:219986_S_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U133A:219986_S_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U133A_2:219986_S_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U133_PLUS_2:238655_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U133B:238655_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HU35KSUBB:RC_H17854_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HU35KSUBC:RC_N27870_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
U133_X3P:G13376863_3P_S_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
U133_X3P:G13376863_3P_A_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
U133_X3P:HS.279653.0.S1_3P_S_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
U133_X3P:HS.198529.0.A1_3P_S_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
U133_X3P:HS.198529.0.A1_3P_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U133_PLUS_2:237481_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U133B:237481_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U133_PLUS_2:237482_S_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U133B:237482_S_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U95C:58829_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U95C:64881_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U95E:71210_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U95E:86412_AT acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U95E:71212_AT Acyl-Coenzyme A dehydrogenase family, member 10 hs
HG-U95E:78974_AT Acyl-Coenzyme A dehydrogenase family, member 10 hs
MG-U74BV2:109424_AT acyl-Coenzyme A dehydrogenase family, member 10 mm
MOE430A:1429339_A_AT acyl-Coenzyme A dehydrogenase family, member 10 mm
MOUSE430A_2:1429339_A_AT acyl-Coenzyme A dehydrogenase family, member 10 mm
MOUSE430_2:1429339_A_AT acyl-Coenzyme A dehydrogenase family, member 10 mm
MOE430B:1447741_X_AT Acyl-Coenzyme A dehydrogenase family, member 10, mRNA (cDNA clone IMAGE:4950406) mm
MOUSE430_2:1447741_X_AT Acyl-Coenzyme A dehydrogenase family, member 10, mRNA (cDNA clone IMAGE:4950406) mm
MG-U74BV2:165025_F_AT Acyl-Coenzyme A dehydrogenase family, member 10, mRNA (cDNA clone IMAGE:4950406) mm
MU19KSUBC:TC41125_AT Acyl-Coenzyme A dehydrogenase family, member 10, mRNA (cDNA clone IMAGE:4950406) mm
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
3995 acyl-CoA dehydrogenase activity inferred from electronic annotation QuickGO AmiGO
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504508 K09H11.1 [Caenorhabditis elegans] gb|AAB52261.2| Hypothetical protein K09H11.1 [Caenorhabditis elegans] 0.0
blast CAE64576 Hypothetical protein CBG09328 [Caenorhabditis briggsae] 0.0
blast XP_588758 PREDICTED: similar to acyl-Coenzyme A dehydrogenase family, member 10 [Bos taurus] 0.0
Protein Families
Method ID Description E-Value
ec ACDM_HUMAN (P11310) Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial precursor (EC 1.3.99.3) (MCAD) 1.0E-109
Protein Domains
Database ID Description E-Value
Pfam IPR006090 EMBL-EBI Acyl-CoA dehydrogenase, C-terminal 4.5E-48
Pfam IPR002575 EMBL-EBI Aminoglycoside phosphotransferase 3.9E-53
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 4.3E-25
Sequence
Target Sequence 
>C. ELEGANS:185198_AT
gtgccaatgcagacggagggtgttaaaattatcagaaacactcatgtttttggatcacag
gatgctccaggaggacatccagagatcacattcacaaatgttcgtgtaccagttgggaat
atgcttttgggagagggaaaaggttttgaaatcgcgcagggaagacttgggccaggaaga
attcatcatgcaatgagacttattgggcatgcggaacgggcaattgatgttataaaagat
aggttattgacaagaattgcatttggaaggaagctggtccaatttgacagtttacgaaaa
gaattggctctttcaagatgtgaagttgagcaagccagattattagtattgaaagccgcc
catatgattgatacagttggaccaaaggaagcaaaatctgaaatcgccatgatcaaagtt
gttgctccaaacatggcaataagcatcctggacagagccatgcagcagcaaggagctcga
ggacttactccatttacaccattggcttccttttatgtatgggcaagatctcttcgaatt
gctgatggaccagatgctgtacacttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCCAATGCAGACGGAGGGTGTTA 399 477 2365 Antisense
GGATCACAGGATGCTCCAGGAGGAC 312 511 2416 Antisense
GAGGACATCCAGAGATCACATTCAC 237 405 2435 Antisense
ATCGCGCAGGGAAGACTTGGGCCAG 286 35 2515 Antisense
GACTTATTGGGCATGCGGAACGGGC 633 369 2561 Antisense
GAAAGCCGCCCATATGATTGATACA 493 359 2715 Antisense
ATCCTGGACAGAGCCATGCAGCAGC 84 39 2809 Antisense
GAGCTCGAGGACTTACTCCATTTAC 309 387 2837 Antisense
TTACACCATTGGCTTCCTTTTATGT 650 683 2858 Antisense
GATCTCTTCGAATTGCTGATGGACC 393 419 2891 Antisense
GATGGACCAGATGCTGTACACTTGG 514 407 2908 Antisense
Sequence Source Affymetrix Proprietary Database