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[185196_at]

Description T24E12.1 /REP_DB=WormBase Gene ID /WP=CE17259 /TR=O44885 /GB=AAB95039.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 25      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 99.1
(-2)
A 		91.2
(-3)
A 		123.7
(0.9)
A 		141
(3)
A 		50
B 88.6
(-3)
A 		111.6
(0.8)
A 		124.7
(3)
A 		102.1
(-0.8)
A 		36
C 82.1
(-3)
A 		142.2
(0.9)
A 		89.5
(-2.5)
A 		174.8
(3)
A 		93
avr 89.9
(-3) 		115
(0) 		112.6
(-0.2) 		139.3
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 103.9
(2)
A 		115.2
(3)
A 		74.7
(-0.7)
A 		50
(-3)
A 		93.2
(1)
A 		75.1
(-0.7)
A 		65
B 107.4
(3)
A 		78.9
(1.3)
A 		104.9
(2.9)
A 		55.3
(-0)
A 		82.9
(1.6)
A 		4.3
(-3)
A 		103
C 84.2
(2.3)
A 		70
(-3)
A 		78.1
(0)
A 		86.1
(3)
A 		82.9
(1.8)
A 		86
(3)
A 		16
avr 98.5
(3) 		88
(1.5) 		85.9
(1.3) 		63.8
(-1.8) 		86.3
(1.3) 		55.1
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 36.1
(3)
A 		19.8
(-3)
A 		32.3
(1.6)
A 		20.6
(-2.7)
A 		16
B 28.2
(2.4)
A 		27.6
(1.9)
A 		28.9
(3)
A 		21.8
(-3)
A 		7
C 27.2
(-3)
A 		40.9
(3)
A 		31.2
(-1.2)
A 		29.5
(-2)
A 		14
avr 30.5
(2.7) 		29.4
(1.8) 		30.8
(3) 		24
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 19.1
(-1.6)
A 		41
(3)
A 		16.3
(-2.2)
A 		12.7
(-3)
A 		28.1
(0.3)
A 		18.3
(-1.8)
A 		28
B 37.4
(3)
A 		26.2
(1.1)
A 		25.5
(1)
A 		14.6
(-0.8)
A 		33.7
(2.4)
A 		1.6
(-3)
A 		36
C 31.2
(3)
A 		21.3
(-1.3)
A 		19.9
(-1.9)
A 		17.3
(-3)
A 		26.8
(1.1)
A 		28.8
(2)
A 		14
avr 29.2
(2.9) 		29.5
(3) 		20.6
(-0.7) 		14.9
(-3) 		29.5
(3) 		16.2
(-2.5) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185196_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4174
Sequence Type Exemplar sequence
Representative Public ID T24E12.1 NCBI
Target Description T24E12.1 /REP_DB=WormBase Gene ID /WP=CE17259 /TR=O44885 /GB=AAB95039.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062249(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062249 NCBI Caenorhabditis elegans T24E12.1 (T24E12.1) mRNA, complete cds. 11/11 None
T24E12.1 ENSEMBL cdna:known chromosome:CEL140:II:3785569:3788135:1 gene:T24E12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3785567-3788134(+) 98.56 100.0
Public Domain and Genome References
Gene Title
Ensembl T24E12.1
Entrez Gene 188860 Entrez gene
SwissProt O44885 EMBL-EBI
WormBase CE17259 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95039 Hypothetical protein T24E12.1 [Caenorhabditis elegans] ref|NP_494650.1| T24E12.1 [Caenorhabditis elegans] 0.0
blast AAK18994 Hypothetical protein Y8A9A.3 [Caenorhabditis elegans] ref|NP_494652.1| Y8A9A.3 [Caenorhabditis elegans] 3.0E-12
Sequence
Target Sequence 
>C. ELEGANS:185196_AT
gcccaatttctgcggcagacactctgttgctcagcatgtgtcttttggcgggctgtgtgc
tcatatggtccatatttgtcgggcctcatcatgccagatatgtctaattattcagtcaat
caaccatcagacttaccttcccaattgactgaacttcaagctctcaaccaggagctctac
aataaggtgctagagcagcttaatgtaatctacgattatgagcatttcacccatcgcctg
caaaatgaaaatatagaattaaaaatgaaaatcaagagccaagaacaggatcttcaagct
ctcagagccaaccaagcccaactcagcttgagcatccctaccgtggctcaaacaagctcc
ttcgccgcaatttcccccatctcgccgtgcttctcgggagttgctccgatgaaaactcag
ggagaagaacattttattgaggaagtttctccttacttgaaaaattacgaggaggcctta
atgtattgggaggaaaatcacaacatagaaattatgaatccagagtggcccgagacggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCCAATTTCTGCGGCAGACACTCT 403 287 913 Antisense
CAGACACTCTGTTGCTCAGCATGTG 544 205 928 Antisense
CTCAGCATGTGTCTTTTGGCGGGCT 432 223 942 Antisense
TATGGTCCATATTTGTCGGGCCTCA 512 655 976 Antisense
GGCCTCATCATGCCAGATATGTCTA 334 543 994 Antisense
GACTTACCTTCCCAATTGACTGAAC 596 369 1042 Antisense
TTTCACCCATCGCCTGCAAAATGAA 628 671 1137 Antisense
GGATCTTCAAGCTCTCAGAGCCAAC 707 511 1200 Antisense
CAAGCCCAACTCAGCTTGAGCATCC 659 185 1225 Antisense
GCTTCTCGGGAGTTGCTCCGATGAA 326 305 1301 Antisense
TGAATCCAGAGTGGCCCGAGACGGT 179 575 1427 Antisense
Sequence Source Affymetrix Proprietary Database