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[185195_at]

Description Y75B8A.11 /REP_DB=WormBase Gene ID /WP=CE23023 /TR=Q9XW71 /GB=CAA22099.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 16      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_total > 14      4grp_total > 05      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 540.5
(0.9)
P 		287.8
(-3)
P 		351.1
(-2)
P 		678.2
(3)
P 		390
B 399.4
(-1.1)
P 		285.3
(-3)
P 		337.2
(-2.1)
P 		636.4
(3)
P 		351
C 442.6
(-1)
P 		367.5
(-2.8)
P 		359.7
(-3)
P 		614.6
(3)
P 		255
avr 460.8
(-0.3) 		313.5
(-3) 		349.3
(-2.3) 		643.1
(3) 		330

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 379
1 2 3 4 5 6 range
A 215.1
(-3)
P 		461.1
(3)
P 		284.5
(-1.3)
P 		264.4
(-1.8)
P 		250.3
(-2.1)
P 		245.4
(-2.3)
A 		246
B 589.5
(3)
P 		366.4
(-1.4)
P 		364.1
(-1.4)
P 		384.1
(-1)
P 		323
(-2.2)
P 		284.5
(-3)
P 		305
C 594.1
(3)
P 		448.3
(0.2)
P 		377.4
(-1.2)
P 		448.7
(0.2)
P 		284.1
(-3)
P 		389.5
(-1)
P 		310
avr 466.2
(3) 		425.3
(1.6) 		342
(-1.1) 		365.7
(-0.3) 		285.8
(-3) 		306.5
(-2.3) 		180
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 196.8
(3)
P 		62.5
(-3)
P 		91.8
(-1.7)
P 		99.3
(-1.4)
P 		134
B 127.4
(2.2)
P 		70.5
(-3)
P 		78.1
(-2.3)
P 		135.6
(3)
P 		65
C 146.5
(3)
P 		105.7
(-2.7)
P 		125.4
(0)
P 		103.6
(-3)
P 		43
avr 156.9
(3) 		79.6
(-3) 		98.4
(-1.5) 		112.8
(-0.4) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 181
1 2 3 4 5 6 range
A 39.6
(-3)
P 		164
(3)
P 		62
(-1.9)
P 		67.1
(-1.7)
P 		75.5
(-1.3)
P 		59.8
(-2)
A 		124
B 205.1
(3)
P 		122
(-1.3)
P 		88.4
(-3)
P 		101.7
(-2.3)
P 		131.2
(-0.8)
P 		106.1
(-2.1)
P 		117
C 220.2
(3)
P 		136.8
(-0.8)
P 		96.1
(-2.7)
P 		90.2
(-3)
P 		91.9
(-2.9)
P 		130.4
(-1.1)
P 		130
avr 155
(3) 		140.9
(1.8) 		82.2
(-3) 		86.3
(-2.7) 		99.5
(-1.6) 		98.8
(-1.6) 		73
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185195_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7369
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.11 NCBI
Target Description Y75B8A.11 /REP_DB=WormBase Gene ID /WP=CE23023 /TR=Q9XW71 /GB=CAA22099.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067183(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067183 NCBI Caenorhabditis elegans Y75B8A.11 (Y75B8A.11) mRNA, complete cds. 11/11 None
GENEFINDER00000020187 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12186299:12189991:1 11/11 None
Y75B8A.11 ENSEMBL cdna:known chromosome:CEL140:III:12186299:12189991:1 gene:Y75B8A.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020077 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12186294-12189987(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.11
Entrez Gene 190703 Entrez gene
SwissProt Q9XW71 EMBL-EBI
WormBase CE23023 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22099 Hypothetical protein Y75B8A.11 [Caenorhabditis elegans] ref|NP_499584.1| Y75B8A.11 [Caenorhabditis elegans] 1.0E-108
blast CAA22099 Hypothetical protein Y75B8A.11 [Caenorhabditis elegans] ref|NP_499584.1| Y75B8A.11 [Caenorhabditis elegans] 1.0E-100
blast CAE75098 Hypothetical protein CBG23020 [Caenorhabditis briggsae] 2.0E-22
blast CAE75098 Hypothetical protein CBG23020 [Caenorhabditis briggsae] 3.0E-22
Sequence
Target Sequence 
>C. ELEGANS:185195_AT
tgtcctcattttggctgtcattgtgatgttggcattgtgccaagagcctgagaaacctga
gaaacggccggcgttgctgtcccgatacggacgagctgttcttccacgttatggaaaaag
gtcgggcaatttgatggaatcgagtcagaattctttgacagaagaatcatcggacgtggt
ttgccaattaatcgatggaaaatacatttgtcttccagttgatgctggttttcttggaga
ggttaatggttcaattaaacagaatagcaaaacaaaatgcccagcattcttcaaaaatgt
ctcattctcattgttctttcgtgccttctatttgactgtgccggcatgcacctcaaagaa
aaacgtcctcctcacctctaccaccagcaccataaaccatcaaaagcttgaaccagcaac
aactctatcacctataaggcaacgacgaaggtgtctatttcaaattgattttgcatattt
gaccgtttgccccagtaaatgtcaggagggcactgataccggaaaagtggccgactacct
tctgagtttgggat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCCTCATTTTGGCTGTCATTGTG 591 557 30 Antisense
GAGAAACCTGAGAAACGGCCGGCGT 630 381 79 Antisense
CGATACGGACGAGCTGTTCTTCCAC 560 245 112 Antisense
GAATCATCGGACGTGGTTTGCCAAT 6 329 193 Antisense
TACATTTGTCTTCCAGTTGATGCTG 524 643 232 Antisense
AAATGTCTCATTCTCATTGTTCTTT 610 119 324 Antisense
TCGTGCCTTCTATTTGACTGTGCCG 571 605 348 Antisense
GCAACAACTCTATCACCTATAAGGC 356 317 445 Antisense
TTTGCATATTTGACCGTTTGCCCCA 552 667 499 Antisense
CCGTTTGCCCCAGTAAATGTCAGGA 326 265 512 Antisense
GCCGACTACCTTCTGAGTTTGGGAT 232 283 559 Antisense
Sequence Source Affymetrix Proprietary Database