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[185192_at]

Description F47C10.7 /REP_DB=WormBase Gene ID /WP=CE10666 /TR=O01562 /GB=AAB52272.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 24      6grp_total > 25      4grp_total > 13      6grp_cgc > 33      6grp_high1_sub > 02      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 80.4
(-1.4)
P 		61
(-2.3)
A 		45.1
(-3)
A 		178.1
(3)
P 		133
B 82.3
(2.4)
P 		32.8
(-3)
A 		33.8
(-2.9)
A 		87.7
(3)
P 		55
C 93.5
(3)
P 		54.6
(-3)
A 		73.5
(-0.1)
P 		84.9
(1.7)
P 		39
avr 85.4
(0.2) 		49.5
(-3) 		50.8
(-2.9) 		116.9
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 64
(3)
P 		63.8
(3)
A 		51.1
(0.6)
P 		53.7
(1.1)
P 		42
(-1)
A 		31.4
(-3)
A 		33
B 73.9
(3)
P 		72.3
(2.8)
P 		46
(-0.8)
P 		30.4
(-3)
A 		50.1
(-0.3)
P 		52.4
(0)
P 		44
C 82.2
(1.4)
P 		104.8
(3)
P 		53.2
(-0.7)
M 		51.9
(-0.7)
A 		20
(-3)
A 		34.2
(-2)
P 		85
avr 73.4
(2) 		80.3
(3) 		50.1
(-1.2) 		45.3
(-1.9) 		37.4
(-3) 		39.3
(-2.7) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 29.3
(3)
P 		13.2
(-2.5)
A 		11.8
(-3)
A 		26.1
(1.9)
P 		18
B 26.2
(3)
P 		8.1
(-2.9)
A 		7.8
(-3)
A 		18.7
(0.6)
P 		18
C 30.9
(3)
P 		15.7
(-2.5)
A 		25.6
(1.1)
P 		14.3
(-3)
P 		17
avr 28.8
(3) 		12.3
(-3) 		15.1
(-2) 		19.7
(-0.3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 11.8
(-1.3)
P 		22.7
(3)
A 		11.1
(-1.6)
P 		13.6
(-0.6)
P 		12.7
(-1)
A 		7.6
(-3)
A 		15
B 25.7
(3)
P 		24.1
(2.5)
P 		11.2
(-1.9)
P 		8
(-3)
A 		20.3
(1.2)
P 		19.5
(0.9)
P 		18
C 30.5
(2.6)
P 		32
(3)
P 		13.5
(-1.4)
M 		10.4
(-2.1)
A 		6.5
(-3)
A 		11.5
(-1.8)
P 		26
avr 22.7
(1.6) 		26.3
(3) 		11.9
(-2.5) 		10.7
(-3) 		13.2
(-2) 		12.9
(-2.2) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185192_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15167
Sequence Type Exemplar sequence
Representative Public ID F47C10.7 NCBI
Target Description F47C10.7 /REP_DB=WormBase Gene ID /WP=CE10666 /TR=O01562 /GB=AAB52272.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071663(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071663 NCBI Caenorhabditis elegans F47C10.7 (F47C10.7) mRNA, complete cds. 11/11 None
SNAP00000021958 ENSEMBL cdna:SNAP chromosome:CEL140:V:3856142:3862746:-1 11/11 None
GENEFINDER00000021961 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3856142:3860016:-1 10/11 None
F47C10.7 ENSEMBL cdna:known chromosome:CEL140:V:3856142:3857674:-1 gene:F47C10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3856141-3857674(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-188
Ensembl F47C10.7
Entrez Gene 185912 Entrez gene
SwissProt O01562 EMBL-EBI
WormBase CE10666 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52272 Hypothetical protein F47C10.7 [Caenorhabditis elegans] ref|NP_504064.1| F47C10.7 [Caenorhabditis elegans] 0.0
blast AAB52273 Hypothetical protein F47C10.8 [Caenorhabditis elegans] ref|NP_504065.1| F47C10.8 [Caenorhabditis elegans] 0.0
blast AAB52273 Hypothetical protein F47C10.8 [Caenorhabditis elegans] ref|NP_504065.1| F47C10.8 [Caenorhabditis elegans] 1.0E-177
blast AAB52274 Hypothetical protein F47C10.4 [Caenorhabditis elegans] ref|NP_504066.1| F47C10.4 [Caenorhabditis elegans] 1.0E-177
blast AAB52272 Hypothetical protein F47C10.7 [Caenorhabditis elegans] ref|NP_504064.1| F47C10.7 [Caenorhabditis elegans] 1.0E-166
blast AAB52272 Hypothetical protein F47C10.7 [Caenorhabditis elegans] ref|NP_504064.1| F47C10.7 [Caenorhabditis elegans] 1.0E-152
blast AAB52273 Hypothetical protein F47C10.8 [Caenorhabditis elegans] ref|NP_504065.1| F47C10.8 [Caenorhabditis elegans] 1.0E-132
blast AAB52268 Hypothetical protein F47C10.3 [Caenorhabditis elegans] ref|NP_504063.1| F47C10.3 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 8.1E-48
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.8E-18
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 4.7E-47
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.3E-51
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 8.1E-48
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.2E-13
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 5.1E-5
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.6E-5
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.3E-5
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.9E-49
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 1.1E-37
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.2E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.6E-5
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 7.6E-12
Sequence
Target Sequence 
>C. ELEGANS:185192_AT
aaggttgtgcttctccgaaatttctcctcgaaatcaatagtccttgatagtgcaatgagg
gctctgaatgcaaaagttgatagagtgacaacaccagatggcgaggatatttactcggat
ataatattgtcgatgttctccgctggatttttaaatagcatacaatgcggtttagtgtct
cgtgttgccgagcttaaagtcaccgagttggagcacgctatgctgagtgtcttgctgttt
tgtaatccagccatccacccgttgtctgaaagaactcgaagactgctagcaacccggcag
aagtcatatagttctacccttcttcaatattgcctcctatcctatcaacaatcgggacca
tctagatttgcagaccttctgtcaatatcacacgtgatcaataagacatcagaagatgca
aacagtcttacaacactttgccagctgtactttccaaaatcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGTTGTGCTTCTCCGAAATTTCT 18 159 571 Antisense
ATATTGTCGATGTTCTCCGCTGGAT 91 19 694 Antisense
AATGCGGTTTAGTGTCTCGTGTTGC 482 161 734 Antisense
GTGTTGCCGAGCTTAAAGTCACCGA 648 483 752 Antisense
AAGTCACCGAGTTGGAGCACGCTAT 366 157 767 Antisense
ACGCTATGCTGAGTGTCTTGCTGTT 556 91 785 Antisense
GACTGCTAGCAACCCGGCAGAAGTC 214 375 851 Antisense
GCCTCCTATCCTATCAACAATCGGG 292 279 902 Antisense
AGACCTTCTGTCAATATCACACGTG 466 69 942 Antisense
ACAGTCTTACAACACTTTGCCAGCT 681 107 992 Antisense
TGCCAGCTGTACTTTCCAAAATCTA 7 587 1009 Antisense
Sequence Source Affymetrix Proprietary Database