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[185191_s_at]

Description M01G12.11 /REP_DB=WormBase Gene ID /WP=CE18074 /TR=O62314 /GB=CAB04617.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 58      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.1
(-3)
A 		2.8
(-1.6)
A 		5.1
(3)
A 		3.1
(-1)
A 		3
B 1.5
(-3)
A 		4.4
(2.8)
A 		4.5
(3)
A 		1.9
(-2.2)
A 		3
C 5
(3)
A 		3.7
(0.2)
A 		2.2
(-3)
A 		2.3
(-2.8)
A 		3
avr 2.9
(-1) 		3.6
(1.8) 		3.9
(3) 		2.4
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 5.7
(3)
A 		5
(2)
A 		2.1
(-1.9)
A 		3.6
(0.1)
A 		3.5
(0)
A 		1.3
(-3)
A 		4
B 1.9
(-3)
A 		2.1
(-2.5)
A 		2.6
(-1.4)
A 		4.5
(3)
A 		2.7
(-1.2)
A 		2.6
(-1.4)
A 		3
C 1.3
(-3)
A 		3.3
(3)
A 		3.1
(2.4)
A 		2.7
(1.2)
A 		2.9
(1.8)
A 		2.5
(0.6)
A 		2
avr 3
(0.6) 		3.5
(2.6) 		2.6
(-1) 		3.6
(3) 		3
(0.6) 		2.1
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 0.7
(-1.5)
A 		0.6
(-2.3)
A 		1.3
(3)
A 		0.5
(-3)
A 		1
B 0.5
(-2.1)
A 		1.1
(3)
A 		1
(2.1)
A 		0.4
(-3)
A 		1
C 1.7
(3)
A 		1.1
(0.2)
A 		0.8
(-1.2)
A 		0.4
(-3)
A 		1
avr 1
(3) 		0.9
(2) 		1
(3) 		0.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(0.2)
A 		1.8
(3)
A 		0.5
(-2.2)
A 		0.9
(-0.6)
A 		1.1
(0.2)
A 		0.3
(-3)
A 		2
B 0.7
(-2)
A 		0.7
(-2)
A 		0.6
(-3)
A 		1.2
(3)
A 		1.1
(2)
A 		1
(1)
A 		1
C 0.5
(-3)
A 		1
(3)
A 		0.8
(0.6)
A 		0.5
(-3)
A 		0.9
(1.8)
A 		0.8
(0.6)
A 		1
avr 0.8
(-1) 		1.2
(3) 		0.6
(-3) 		0.9
(0) 		1
(1) 		0.7
(-2) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185191_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.554
Sequence Type Exemplar sequence
Representative Public ID M01G12.11 NCBI
Target Description M01G12.11 /REP_DB=WormBase Gene ID /WP=CE18074 /TR=O62314 /GB=CAB04617.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060660(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060660 NCBI Caenorhabditis elegans M01G12.11 (M01G12.11) mRNA, complete cds. 11/11 None
GENEFINDER00000024234 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12134577:12139503:1 11/11 None
M01G12.11 ENSEMBL cdna:known chromosome:CEL140:I:12125071:12125250:-1 gene:M01G12.11 11/11 None
M01G12.3 ENSEMBL cdna:pseudogene chromosome:CEL140:I:12134577:12137087:1 gene:M01G12.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024224 8/11 Cross Hyb Matching Probes None
SNAP00000024228 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12134507-12134687(+) 100.0 100.0
chrI:12125001-12125181(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01G12.11
M01G12.3
Entrez Gene 187387 Entrez gene
SwissProt O62314 EMBL-EBI
WormBase CE18074 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T23663 hypothetical protein M01G12.3 - Caenorhabditis elegans 1.0E-153
blast CAB04614 Hypothetical protein M01G12.5 [Caenorhabditis elegans] ref|NP_493066.1| M01G12.5 [Caenorhabditis elegans] 1.0E-152
blast AAG24115 Serpentine receptor, class t protein 20 [Caenorhabditis elegans] ref|NP_504180.2| Serpentine Receptor, class T family member (srt-20) [Caenorhabditis elegans] 1.0E-145
blast CAB04617 Hypothetical protein M01G12.11 [Caenorhabditis elegans] ref|NP_493061.1| M01G12.11 [Caenorhabditis elegans] 7.0E-31
blast T23663 hypothetical protein M01G12.3 - Caenorhabditis elegans 5.0E-30
blast AAG24109 Serpentine receptor, class t protein 19 [Caenorhabditis elegans] ref|NP_504182.1| Serpentine Receptor, class T family member (srt-19) [Caenorhabditis elegans] 2.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 5.5E-101
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000024234 7 45-67,80-102,117-139,160-182,213-230,251-273,278-300
Sequence
Target Sequence 
>C. ELEGANS:185191_S_AT
taataccatcttacaacttaacctttacttatatggtacttaatggattcgagttagatc
cggattattatggatgtcccgaggaaatgcacaataggccaccgcatacggctaggccgt
attggggattgtggtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATACCATCTTACAACTTAACCTT 335 635 23 Antisense
TACAACTTAACCTTTACTTATATGG 596 641 34 Antisense
TACTTATATGGTACTTAATGGATTC 57 645 48 Antisense
GATTCGAGTTAGATCCGGATTATTA 122 429 68 Antisense
TCCGGATTATTATGGATGTCCCGAG 362 593 81 Antisense
ATGGATGTCCCGAGGAAATGCACAA 175 51 92 Antisense
GAGGAAATGCACAATAGGCCACCGC 66 405 103 Antisense
TGCACAATAGGCCACCGCATACGGC 93 577 110 Antisense
ATAGGCCACCGCATACGGCTAGGCC 608 1 116 Antisense
CGGCTAGGCCGTATTGGGGATTGTG 564 237 131 Antisense
CTAGGCCGTATTGGGGATTGTGGTT 111 223 134 Antisense
Sequence Source Affymetrix Proprietary Database