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[185190_at]

Description F33D11.2 /REP_DB=WormBase Gene ID /WP=CE09892 /TR=O44776 /GB=AAB96696.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 18      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 7.2
(-3)
A 		39.6
(-0.5)
A 		34.4
(-0.9)
A 		85.9
(3)
A 		79
B 34.5
(-3)
A 		42
(0.7)
A 		45
(2.2)
A 		46.6
(3)
A 		12
C 26.9
(-1.5)
A 		45.2
(0.2)
A 		10.9
(-3)
A 		75.4
(3)
M 		65
avr 22.9
(-3) 		42.3
(-0.5) 		30.1
(-2.1) 		69.3
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 20.1
(-2.7)
A 		21.9
(-2.5)
A 		24.4
(-2.1)
A 		17.7
(-3)
A 		53.5
(1.6)
A 		64.8
(3)
A 		47
B 32.7
(0.2)
A 		46
(3)
A 		17.4
(-3)
A 		44.3
(2.6)
A 		36
(0.9)
M 		45.9
(3)
P 		29
C 6.1
(-3)
A 		67.4
(2.1)
P 		61.7
(1.7)
P 		60.9
(1.6)
A 		31.6
(-0.9)
M 		77.7
(3)
P 		72
avr 19.6
(-3) 		45.1
(0.5) 		34.5
(-0.9) 		41
(-0) 		40.4
(-0.1) 		62.8
(3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.6
(-3)
A 		8.6
(0.6)
A 		9
(0.8)
A 		12.6
(3)
A 		10
B 11
(3)
A 		10.4
(-0.3)
A 		10.4
(-0.3)
A 		9.9
(-3)
A 		1
C 8.9
(0.3)
A 		13
(3)
A 		3.8
(-3)
A 		12.7
(2.8)
M 		9
avr 7.5
(-3) 		10.7
(1.6) 		7.7
(-2.7) 		11.7
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 3.7
(-3)
A 		7.8
(-1)
A 		5.3
(-2.2)
A 		4.5
(-2.6)
A 		16.1
(3)
A 		15.8
(2.9)
A 		12
B 11.4
(0.3)
A 		15.3
(2.2)
A 		4.2
(-3)
A 		11.7
(0.5)
A 		14.6
(1.8)
M 		17.1
(3)
P 		13
C 2.3
(-3)
A 		20.6
(1.6)
P 		15.7
(0.4)
P 		12.2
(-0.5)
A 		10.2
(-1)
M 		26
(3)
P 		24
avr 5.8
(-3) 		14.6
(0.8) 		8.4
(-1.9) 		9.5
(-1.4) 		13.6
(0.4) 		19.6
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185190_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1054
Sequence Type Exemplar sequence
Representative Public ID F33D11.2 NCBI
Target Description F33D11.2 /REP_DB=WormBase Gene ID /WP=CE09892 /TR=O44776 /GB=AAB96696.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059295 NCBI Caenorhabditis elegans F33D11.2 (F33D11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000028962 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5855747:5857527:1 11/11 None
SNAP00000028954 ENSEMBL cdna:SNAP chromosome:CEL140:I:5855881:5857527:1 11/11 None
F33D11.2 ENSEMBL cdna:known chromosome:CEL140:I:5855397:5857527:1 gene:F33D11.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5855396-5857527(+) 94.13 100.0
Public Domain and Genome References
Gene Title
Ensembl F33D11.2
Entrez Gene 185225 Entrez gene
SwissProt O44776 EMBL-EBI
WormBase CE09892 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB96696 Hypothetical protein F33D11.2 [Caenorhabditis elegans] ref|NP_491696.1| F33D11.2 [Caenorhabditis elegans] 0.0
blast AAB96696 Hypothetical protein F33D11.2 [Caenorhabditis elegans] ref|NP_491696.1| F33D11.2 [Caenorhabditis elegans] 1.0E-150
blast CAB02749 Hypothetical protein C17E4.1 [Caenorhabditis elegans] ref|NP_492500.1| C17E4.1 [Caenorhabditis elegans] 2.0E-92
blast CAB02749 Hypothetical protein C17E4.1 [Caenorhabditis elegans] ref|NP_492500.1| C17E4.1 [Caenorhabditis elegans] 2.0E-89
blast CAB02749 Hypothetical protein C17E4.1 [Caenorhabditis elegans] ref|NP_492500.1| C17E4.1 [Caenorhabditis elegans] 5.0E-89
blast CAD60422 Hypothetical protein T04B2.7 [Caenorhabditis elegans] ref|NP_872109.2| T04B2.7 [Caenorhabditis elegans] 3.0E-68
Sequence
Target Sequence 
>C. ELEGANS:185190_AT
gagaaggtctccatattgcgatcgagacttgaagctcggaaagtaaaacttttgaaagaa
aatgagatgggcttaagcacgacaactacaactccaactgaggaagaaccggagcccaca
gaggacacaatcattaactgtgctcgagctcttcaagttgtcaaacttgaatctttgatt
tcaaaagaaatttctgaagccgatcagaagattcttcgtggatactgtcgtagtggagat
caagaggaaaaagctgagatttccattgaaaagattgcagtcgctgttttaaatgcagtc
gttcagaagaatgaattcattcggcacgttgtggtttcaggagagttaaggatgtttgca
gtcgatgaaaaaaaggcaaaagttccaatgatggcgttgatgatggctcgtaaagatctc
acttatgttgcctgggcaaaatgtaacaaggacgtggagaacactattgatggaacttgg
gctggtatggcggtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGGTCTCCATATTGCGATCGA 449 391 700 Antisense
GGGCTTAAGCACGACAACTACAACT 252 493 768 Antisense
GGAGCCCACAGAGGACACAATCATT 534 521 810 Antisense
CAATCATTAACTGTGCTCGAGCTCT 447 181 827 Antisense
GTGCTCGAGCTCTTCAAGTTGTCAA 398 479 839 Antisense
GAAGATTCTTCGTGGATACTGTCGT 15 339 906 Antisense
GCAGTCGCTGTTTTAAATGCAGTCG 90 313 976 Antisense
AATTCATTCGGCACGTTGTGGTTTC 170 175 1013 Antisense
TGGCGTTGATGATGGCTCGTAAAGA 86 545 1091 Antisense
GTAAAGATCTCACTTATGTTGCCTG 589 461 1109 Antisense
GGAACTTGGGCTGGTATGGCGGTCA 336 529 1171 Antisense
Sequence Source Affymetrix Proprietary Database