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[185189_at]

Description F21F8.11 /REP_DB=WormBase Gene ID /WP=CE09545 /TR=O01537 /GB=AAC47997.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 32      4grp_high_8_8 > 43      6grp_highest_nonorm > 70      6grp_total > 08      4grp_total > 52      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 284
1 2 3 4 range
A 339.8
(2.1)
P 		368.4
(3)
P 		255.1
(-0.5)
P 		173.9
(-3)
P 		195
B 368.3
(3)
P 		259.3
(0.7)
P 		248.9
(0.4)
P 		87.6
(-3)
P 		281
C 344.9
(2.3)
P 		371.3
(3)
P 		358.3
(2.7)
P 		138.7
(-3)
P 		233
avr 351
(3) 		333
(2.5) 		287.4
(1.2) 		133.4
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 272
1 2 3 4 5 6 range
A 457.1
(3)
P 		234.4
(-2.4)
P 		340.6
(0.2)
P 		287.8
(-1.1)
P 		352.1
(0.5)
P 		209.9
(-3)
P 		247
B 379.1
(2.8)
P 		347.2
(1.4)
P 		292.2
(-1.2)
P 		382.9
(3)
P 		252.9
(-3)
P 		289.9
(-1.3)
P 		130
C 308.3
(2.1)
P 		331.1
(3)
P 		322.5
(2.6)
P 		317.6
(2.4)
P 		185
(-3)
P 		206.9
(-2.1)
P 		146
avr 381.5
(3) 		304.2
(-0.2) 		318.4
(0.4) 		329.4
(0.9) 		263.3
(-1.9) 		235.6
(-3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 123.7
(3)
P 		80
(0.3)
P 		66.7
(-0.5)
P 		25.5
(-3)
P 		98
B 117.5
(3)
P 		64
(-0.2)
P 		57.7
(-0.6)
P 		18.7
(-3)
P 		99
C 114.2
(2.4)
P 		106.8
(1.9)
P 		124.9
(3)
P 		23.4
(-3)
P 		102
avr 118.5
(3) 		83.6
(0.8) 		83.1
(0.8) 		22.5
(-3) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 84.3
(0.6)
P 		83.4
(0.5)
P 		74.2
(-0.5)
P 		73
(-0.6)
P 		106.2
(3)
P 		51.1
(-3)
P 		55
B 131.9
(3)
P 		115.6
(1.4)
P 		71
(-3)
P 		101.4
(-0)
P 		102.7
(0.1)
P 		108.1
(0.7)
P 		61
C 114.3
(3)
P 		101
(1.5)
P 		82.1
(-0.6)
P 		63.9
(-2.6)
P 		59.9
(-3)
P 		69.3
(-2)
P 		54
avr 110.2
(3) 		100
(1.2) 		75.8
(-3) 		79.4
(-2.4) 		89.6
(-0.6) 		76.2
(-2.9) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185189_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11881
Sequence Type Exemplar sequence
Representative Public ID F21F8.11 NCBI
Target Description F21F8.11 /REP_DB=WormBase Gene ID /WP=CE09545 /TR=O01537 /GB=AAC47997.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072738(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072738 NCBI Caenorhabditis elegans F21F8.11 (F21F8.11) mRNA, complete cds. 11/11 None
SNAP00000008552 ENSEMBL cdna:SNAP chromosome:CEL140:V:8285202:8287106:-1 11/11 None
GENEFINDER00000008565 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8285202:8287475:-1 11/11 None
F21F8.11 ENSEMBL cdna:known chromosome:CEL140:V:8285202:8287475:-1 gene:F21F8.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8285202-8287476(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21F8.11
Entrez Gene 184790 Entrez gene
SwissProt O01537 EMBL-EBI
WormBase CE09545 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47997 Hypothetical protein F21F8.11 [Caenorhabditis elegans] ref|NP_505139.1| F21F8.11 [Caenorhabditis elegans] 0.0
blast CAE66083 Hypothetical protein CBG11300 [Caenorhabditis briggsae] 0.0
blast AAA27912 Hypothetical protein C02C2.4 [Caenorhabditis elegans] ref|NP_498709.1| C02C2.4 [Caenorhabditis elegans] sp|P34272|YKH4_CAEEL Hypothetical protein C02C2.4 in chromosome III 4.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505139.1 9 25-47,121-143,152-174,240-262,308-330,345-367,409-431,441-463,475-497
F21F8.11 9 25-47,121-143,152-174,240-262,308-330,345-367,409-431,441-463,475-497
SNAP00000008552 9 78-100,115-137,174-196,201-223,271-293,308-330,372-394,404-426,438-460
GENEFINDER00000008565 9 25-47,121-143,152-174,240-262,308-330,345-367,409-431,441-463,475-497
Sequence
Target Sequence 
>C. ELEGANS:185189_AT
cgaacggattctactcagccattcctcacatctccaatcttattgcaaaactcatttggg
gatacctcatggacaaaatgagacataagaaaatactctccccatcagcaactgtgaaac
tgtctcaatttgcttcaatgatgggaatttcagtttcttgcttcttcctcagatatatga
attgtgccacaccattctacgcacttgttctgctgagttctgtatctgcattcttcgggc
tgtcgatttctggtttctacacatcgctcctgtcaattgcgccatctcatatcggaacac
tcaccagtcttgcaactgttatcggtttcgtcggccgaatgttcacacctctcatgatct
catattacaagactgttggaactgctgaagaatggggacacgttcttttaatttatgtgt
ttgcaagtgccactggtggaatcatttttttgctcttcggct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGAACGGATTCTACTCAGCCATTCC 446 251 1043 Antisense
GGGAATTTCAGTTTCTTGCTTCTTC 376 493 1185 Antisense
TGAATTGTGCCACACCATTCTACGC 456 575 1220 Antisense
CATTCTACGCACTTGTTCTGCTGAG 242 217 1235 Antisense
TATCTGCATTCTTCGGGCTGTCGAT 257 657 1265 Antisense
GCTGTCGATTTCTGGTTTCTACACA 30 295 1281 Antisense
CTACACATCGCTCCTGTCAATTGCG 460 227 1299 Antisense
ATTGCGCCATCTCATATCGGAACAC 443 7 1318 Antisense
GAACACTCACCAGTCTTGCAACTGT 95 353 1337 Antisense
TTCACACCTCTCATGATCTCATATT 115 687 1384 Antisense
GGAATCATTTTTTTGCTCTTCGGCT 338 533 1480 Antisense
Sequence Source Affymetrix Proprietary Database