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[185188_at]

Description C32H11.13 /REP_DB=WormBase Gene ID /WP=CE19719 /TR=Q9XUH2 /GB=CAB05139.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 24      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_total > 02      4grp_total > 50      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 145
1 2 3 4 range
A 128.4
(-3)
P 		229
(3)
P 		211
(1.9)
P 		144.2
(-2.1)
P 		101
B 131.2
(-0.8)
P 		211
(3)
P 		185.7
(1.8)
P 		84.4
(-3)
P 		127
C 106.1
(-3)
P 		214.2
(3)
P 		139.5
(-1.1)
P 		151
(-0.5)
P 		108
avr 121.9
(-3) 		218.1
(3) 		178.7
(0.5) 		126.5
(-2.7) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 87.4
(3)
P 		53.4
(-2.4)
P 		50.5
(-2.8)
P 		49.5
(-3)
P 		73.2
(0.8)
A 		54.2
(-2.3)
P 		38
B 85.6
(1.9)
P 		67.8
(-0.3)
P 		75
(0.6)
P 		61
(-1.2)
P 		94.8
(3)
P 		46.2
(-3)
P 		49
C 46.4
(-3)
P 		129.3
(3)
P 		49.6
(-2.8)
P 		85.5
(-0.2)
P 		49.3
(-2.8)
P 		64.2
(-1.7)
P 		83
avr 73.1
(0.8) 		83.5
(3) 		58.4
(-2.3) 		65.3
(-0.8) 		72.4
(0.7) 		54.9
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 46.8
(1.5)
P 		49.7
(2)
P 		55.2
(3)
P 		21.1
(-3)
P 		34
B 41.8
(1.2)
P 		52.1
(3)
P 		43
(1.4)
P 		18
(-3)
P 		34
C 35.1
(-1.4)
P 		61.6
(3)
P 		48.6
(0.8)
P 		25.5
(-3)
P 		36
avr 41.2
(0.6) 		54.5
(3) 		48.9
(2) 		21.5
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 16.1
(-0.2)
P 		19
(1.3)
P 		11
(-3)
P 		12.5
(-2.2)
P 		22.1
(3)
A 		13.2
(-1.8)
P 		11
B 29.8
(0.7)
P 		22.6
(-1.3)
P 		18.2
(-2.5)
P 		16.2
(-3)
P 		38.5
(3)
P 		17.2
(-2.7)
P 		22
C 17.2
(-2)
P 		39.5
(3)
P 		12.6
(-3)
P 		17.2
(-2)
P 		15.9
(-2.3)
P 		21.5
(-1)
P 		27
avr 21
(0.3) 		27
(3) 		13.9
(-3) 		15.3
(-2.4) 		25.5
(2.3) 		17.3
(-1.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185188_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8454
Sequence Type Exemplar sequence
Representative Public ID C32H11.13 NCBI
Target Description C32H11.13 /REP_DB=WormBase Gene ID /WP=CE19719 /TR=Q9XUH2 /GB=CAB05139.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070074(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070074 NCBI Caenorhabditis elegans C32H11.13 (C32H11.13) mRNA, complete cds. 11/11 None
SNAP00000038563 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12942903:12944448:1 11/11 None
GENEFINDER00000038566 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12942689:12944448:1 11/11 None
C32H11.13 ENSEMBL cdna:known chromosome:CEL140:IV:12942689:12944496:1 gene:C32H11.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12942694-12944454(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C32H11.13
Entrez Gene 183136 Entrez gene
SwissProt Q9XUH2 EMBL-EBI
WormBase CE19719 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05139 Hypothetical protein C32H11.13 [Caenorhabditis elegans] ref|NP_502475.1| C32H11.13 [Caenorhabditis elegans] 0.0
blast CAB03521 Hypothetical protein K10D11.1 [Caenorhabditis elegans] ref|NP_502486.2| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-17) [Caenorhabditis elegans] 1.0E-108
blast CAB03521 Hypothetical protein K10D11.1 [Caenorhabditis elegans] ref|NP_502486.2| Downstream Of DAF-16 (regulated by DAF-16) family member (dod-17) [Caenorhabditis elegans] 1.0E-106
blast CAB05220 Hypothetical protein F55G11.8 [Caenorhabditis elegans] ref|NP_502481.1| F55G11.8 [Caenorhabditis elegans] 1.0E-105
blast CAB03527 Hypothetical protein F55G11.4 [Caenorhabditis elegans] emb|CAB05224.1| Hypothetical protein F55G11.4 [Caenorhabditis elegans] ref|NP_502485.1| F55G11.4 [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.0E-46
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 2.4E-48
Sequence
Target Sequence 
>C. ELEGANS:185188_AT
ggccgttgatctccactatggaatcgggtttgccggttttgtcatcaatgcaacaaacac
gccatatgctcatgaatacggtgctagtggaattaccctattaacatttccagaaaacac
cacggatttattctcgttgagaagtgtgctggtttatgaaggaaacgatttgaaaactgc
aaactatatttcaaatcttttcttgctctaccaaactggcaaacaatgggtgtcccgaac
caatggaattgtagtggtgaacctagaggcttccacttcaatggatcagcttttgattca
aggatctcaatatttaacggctatcggtgaaatggtggaacttcggccggaattgaattc
aatttacaccggagctctccagggaggggagaagaaatcatcgttggtttcagtagctga
tgtcaaaatgagaatggttgatgttaaaatgaatttggacgccaccgttgcaatctacta
tgggtctccagatgtccagactcacgataaaacttataccggagaacaactgaaacaggc
tttgccattagagtttccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCCGTTGATCTCCACTATGGAATC 323 543 474 Antisense
GAATTACCCTATTAACATTTCCAGA 240 323 563 Antisense
AACACCACGGATTTATTCTCGTTGA 579 135 589 Antisense
AAATCTTTTCTTGCTCTACCAAACT 626 115 666 Antisense
ACAATGGGTGTCCCGAACCAATGGA 683 113 696 Antisense
AACCTAGAGGCTTCCACTTCAATGG 358 145 733 Antisense
GAATTCAATTTACACCGGAGCTCTC 44 325 828 Antisense
TGAATTTGGACGCCACCGTTGCAAT 262 575 923 Antisense
GTTGCAATCTACTATGGGTCTCCAG 236 439 940 Antisense
GTCTCCAGATGTCCAGACTCACGAT 304 471 957 Antisense
CAGGCTTTGCCATTAGAGTTTCCAG 355 207 1009 Antisense
Sequence Source Affymetrix Proprietary Database