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[185187_at]

Description C50E10.2 /REP_DB=WormBase Gene ID /WP=CE19756 /TR=Q9TZJ2 /GB=AAC67442.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 24.8
(-1.3)
A 		8.6
(-2.8)
A 		6
(-3)
A 		72
(3)
A 		66
B 42.1
(1.2)
A 		46.7
(2.1)
A 		20
(-3)
A 		51.5
(3)
A 		32
C 60.3
(3)
A 		15.9
(-3)
A 		30.3
(-1.1)
A 		45.2
(1)
A 		44
avr 42.4
(0.8) 		23.7
(-2.2) 		18.8
(-3) 		56.2
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 41.6
(0.5)
A 		31.6
(-1.3)
A 		50.5
(2.1)
A 		22.5
(-3)
A 		55.3
(3)
A 		29.3
(-1.8)
A 		33
B 3.5
(-3)
A 		24.9
(-1.1)
A 		25.1
(-1.1)
A 		44.6
(0.6)
A 		72.2
(3)
A 		52.7
(1.3)
A 		69
C 50.4
(-0.8)
A 		50.3
(-0.8)
A 		22.5
(-3)
A 		97.9
(3)
A 		71
(0.9)
A 		67.3
(0.6)
A 		75
avr 31.8
(-3) 		35.6
(-2.3) 		32.7
(-2.8) 		55
(1) 		66.2
(3) 		49.8
(0.1) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 9
(2)
A 		1.9
(-2.8)
A 		1.6
(-3)
A 		10.5
(3)
A 		9
B 13.4
(3)
A 		11.5
(1.7)
A 		4.6
(-3)
A 		11
(1.4)
A 		9
C 20
(3)
A 		4.6
(-3)
A 		10.5
(-0.7)
A 		7.6
(-1.8)
A 		15
avr 14.1
(3) 		6
(-2.7) 		5.6
(-3) 		9.7
(-0.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 7.7
(-1.9)
A 		11.2
(-0)
A 		11
(-0.1)
A 		5.7
(-3)
A 		16.7
(3)
A 		7.1
(-2.2)
A 		11
B 1.2
(-3)
A 		8.3
(-1.5)
A 		6.1
(-2)
A 		11.8
(-0.7)
A 		29.3
(3)
A 		19.6
(0.9)
A 		28
C 18.7
(1.5)
A 		15.3
(0.3)
A 		5.7
(-3)
A 		19.7
(1.9)
A 		23
(3)
A 		22.5
(2.8)
A 		17
avr 9.2
(-2.4) 		11.6
(-1.4) 		7.6
(-3) 		12.4
(-1.1) 		23
(3) 		16.4
(0.4) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185187_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3660
Sequence Type Exemplar sequence
Representative Public ID C50E10.2 NCBI
Target Description C50E10.2 /REP_DB=WormBase Gene ID /WP=CE19756 /TR=Q9TZJ2 /GB=AAC67442.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064212(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064212 NCBI Caenorhabditis elegans C50E10.2 (C50E10.2) mRNA, complete cds. 11/11 None
C50E10.2 ENSEMBL cdna:known chromosome:CEL140:II:12305202:12306807:-1 gene:C50E10.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034851 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12305198-12307728(-) 98.43 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E10.2
Entrez Gene 183664 Entrez gene
SwissProt Q965I1 EMBL-EBI
WormBase CE36805 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_496613 C50E10.2 [Caenorhabditis elegans] gb|AAK73861.2| Hypothetical protein C50E10.2 [Caenorhabditis elegans] 1.0E-177
blast CAA94574 Hypothetical protein C25G4.8 [Caenorhabditis elegans] ref|NP_502382.1| C25G4.8 [Caenorhabditis elegans] 1.0E-67
blast CAB00877 Hypothetical protein T16A9.3 [Caenorhabditis elegans] ref|NP_506517.2| T16A9.3 [Caenorhabditis elegans] 6.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR009676 EMBL-EBI Protein of unknown function DUF1265 3.1E-32
Sequence
Target Sequence 
>C. ELEGANS:185187_AT
gaatcaatcccgtcacgacttgaagctgagaacatctgatggcagtcaatttatcacgac
cagccatgcccttctcttcttgacatcttcctattttcgtgagaatttgaagatctcaac
ttctgactacacagttgttggagtagattccttggataccattgacatttgtctcaattt
tatggttacgagattctacaagaaaccagctgtgctctcgccaaaacttgcttttgacat
tttcactttggccacgcaatggaatgttttcaatccgtatattctcacgatttcgcttaa
aagacagttgttcgaggagctgaaaaagaaccatggagatctcgaatacgtgtgcaacat
gctgattgtcgccgaagacgctaagttcccaaatgtccaaagctgctgcatcgccactct
cgtctactatcatttcaacgatttcatgcggatcacggacgggacatggtgcggagcatt
gtgcggatcatggtggaacccgttgcaactctggaactctggaagcgactttttccgaaa
actttcagctattttatcaattttcatgcactttttggccgaacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAATCCCGTCACGACTTGAAG 490 325 792 Antisense
GGCAGTCAATTTATCACGACCAGCC 292 535 832 Antisense
CTTCTTGACATCTTCCTATTTTCGT 323 221 867 Antisense
TACAAGAAACCAGCTGTGCTCTCGC 472 641 988 Antisense
GTGCAACATGCTGATTGTCGCCGAA 385 481 1143 Antisense
TGTCGCCGAAGACGCTAAGTTCCCA 84 557 1158 Antisense
CACTCTCGTCTACTATCATTTCAAC 28 197 1206 Antisense
ATTTCATGCGGATCACGGACGGGAC 710 13 1232 Antisense
TCATGGTGGAACCCGTTGCAACTCT 600 619 1279 Antisense
GCAACTCTGGAACTCTGGAAGCGAC 569 317 1296 Antisense
TTCATGCACTTTTTGGCCGAACTTC 237 689 1354 Antisense
Sequence Source Affymetrix Proprietary Database