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[185186_at] 7TM chemoreceptor, srv family

Description H04M03.6 /REP_DB=WormBase Gene ID /WP=CE20925 /TR=Q9TYR7 /GB=AAD12792.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 23      6grp_total > 63      4grp_total > 01      6grp_cgc > 76      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 24.4
(-3)
P 		34.3
(-1.4)
P 		27.7
(-2.5)
A 		62
(3)
P 		38
B 39.3
(0.7)
P 		28.7
(-1)
A 		53.2
(3)
P 		16.5
(-3)
A 		37
C 22.4
(-2.4)
A 		21.4
(-2.4)
A 		14.2
(-3)
A 		91.4
(3)
P 		77
avr 28.7
(-2.9) 		28.1
(-3) 		31.7
(-2.2) 		56.6
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 12.7
(-2.2)
A 		8
(-3)
A 		32.2
(1)
M 		27.9
(0.3)
A 		44.6
(3)
A 		28.7
(0.4)
A 		37
B 35.3
(3)
P 		28
(1.4)
P 		29.4
(1.7)
A 		7.7
(-3)
A 		19.1
(-0.5)
P 		27.9
(1.4)
P 		28
C 8.2
(-3)
A 		32.8
(0.6)
M 		35.2
(0.9)
A 		49.5
(3)
P 		17.6
(-1.6)
A 		21.8
(-1)
A 		41
avr 18.7
(-3) 		22.9
(-1.1) 		32.3
(3) 		28.4
(1.3) 		27.1
(0.7) 		26.1
(0.3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8.9
(2.3)
P 		7.4
(-2.7)
P 		7.3
(-3)
A 		9.1
(3)
P 		2
B 12.5
(3)
P 		7.1
(-0.6)
A 		12.3
(2.9)
P 		3.5
(-3)
A 		9
C 7.4
(-1.6)
A 		6.2
(-2.3)
A 		4.9
(-3)
A 		15.4
(3)
P 		11
avr 9.6
(3) 		6.9
(-3) 		8.2
(-0.1) 		9.3
(2.3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.3
(-3)
A 		2.8
(-2.7)
A 		7
(-0.5)
M 		7.1
(-0.4)
A 		13.5
(3)
A 		7
(-0.5)
A 		11
B 12.3
(3)
P 		9.3
(1.3)
P 		7.1
(-0)
A 		2
(-3)
A 		7.8
(0.4)
P 		10.4
(1.9)
P 		10
C 3.1
(-3)
A 		10
(3)
M 		8.9
(2)
A 		10
(3)
P 		5.7
(-0.7)
A 		7.3
(0.7)
A 		7
avr 5.9
(-3) 		7.4
(-0.1) 		7.7
(0.5) 		6.4
(-2) 		9
(3) 		8.2
(1.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185186_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10475
Sequence Type Exemplar sequence
Representative Public ID H04M03.6 NCBI
Target Description H04M03.6 /REP_DB=WormBase Gene ID /WP=CE20925 /TR=Q9TYR7 /GB=AAD12792.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068477(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068477 NCBI Caenorhabditis elegans Serpentine Receptor, class V family member (srv-19) (srv-19) mRNA, complete cds. 11/11 None
H04M03.6 ENSEMBL cdna:known chromosome:CEL140:IV:5872050:5874066:-1 gene:H04M03.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034806 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5872055-5874072(-) 86.15 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srv family
Gene Symbol srv-19
Ensembl H04M03.6
Entrez Gene 186684 Entrez gene
SwissProt Q9TYR7 EMBL-EBI
WormBase CE20925 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12792 Serpentine receptor, class v protein 19 [Caenorhabditis elegans] ref|NP_500878.1| Serpentine Receptor, class V family member (srv-19) [Caenorhabditis elegans] 0.0
blast AAD12794 Serpentine receptor, class v protein 21 [Caenorhabditis elegans] ref|NP_500880.1| Serpentine Receptor, class V family member (srv-21) [Caenorhabditis elegans] 4.0E-83
blast AAA82284 Serpentine receptor, class v protein 17 [Caenorhabditis elegans] ref|NP_500876.2| Serpentine Receptor, class V family member (srv-17) [Caenorhabditis elegans] 1.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR005040 EMBL-EBI Caenorhabditis protein of unknown function DUF280 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500878.1 7 23-45,58-77,97-119,191-210,236-255,275-297,317-334
H04M03.6 7 23-45,58-77,97-119,191-210,236-255,275-297,317-334
Sequence
Target Sequence 
>C. ELEGANS:185186_AT
tcaaacatggtctttttcggtactttaaaacatagtttttaccaccccatgtatcctagc
tcggagccacttttatcaggctttatgcagtcgttgaaaccgtggaaaattgttttccta
tactggattccttcaacaattttctgcataatattttattcaagtacggaaattaagtat
gaatctcctgaaagaatggtttatgtcatgaatcccaatattatcaaaaaatcaacgaaa
accgcgtttgtcttcgttatcatttcttgccttatttgtcttattttctattcacttatt
tggaaatttattaaaaccagaagtcaaacagtactgatatccttgcaacgagaaattcga
ttggcatttcaagtttgtctttcttttgtagcccagttaattttactactttatcttgct
tcttcatattattccggggaaattgaagatatggaactaattgttttaacaagaaaatat
tttccactcgtatatggaacactttcatttataggaccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAAACATGGTCTTTTTCGGTACTT 551 627 475 Antisense
ACATAGTTTTTACCACCCCATGTAT 255 103 504 Antisense
CTAGCTCGGAGCCACTTTTATCAGG 55 225 530 Antisense
GTTTTCCTATACTGGATTCCTTCAA 74 447 586 Antisense
GTTTGTCTTCGTTATCATTTCTTGC 592 451 720 Antisense
CATTTCTTGCCTTATTTGTCTTATT 406 215 735 Antisense
TTGTCTTATTTTCTATTCACTTATT 53 707 750 Antisense
ACAGTACTGATATCCTTGCAACGAG 491 107 802 Antisense
TTGTCTTTCTTTTGTAGCCCAGTTA 143 705 849 Antisense
TTACTACTTTATCTTGCTTCTTCAT 224 683 877 Antisense
GGAACACTTTCATTTATAGGACCAT 208 529 970 Antisense
Sequence Source Affymetrix Proprietary Database