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[185185_at]

Description F59E11.7 /REP_DB=WormBase Gene ID /WP=CE11508 /TR=O16759 /GB=AAG24143.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 21      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 22      6grp_total > 32      4grp_total > 12      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 880
1 2 3 4 range
A 496.2
(-0.9)
P 		354.9
(-1.9)
P 		205.4
(-3)
P 		1018
(3)
P 		813
B 495
(-0.8)
P 		424.9
(-1.5)
P 		278.8
(-3)
P 		877.9
(3)
P 		599
C 618.9
(-0.7)
P 		338.5
(-3)
P 		344.1
(-3)
P 		1085.7
(3)
P 		747
avr 536.7
(-0.8) 		372.8
(-2.2) 		276.1
(-3) 		993.9
(3) 		718

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1390
1 2 3 4 5 6 range
A 1366.8
(-0.9)
P 		1658.6
(0.4)
P 		2270.2
(3)
P 		1401.4
(-0.7)
P 		879.8
(-3)
P 		934.5
(-2.8)
P 		1390
B 1837.4
(3)
P 		1829.3
(2.9)
P 		1828.7
(2.9)
P 		1319.2
(-1)
P 		1155
(-2.3)
P 		1062.3
(-3)
P 		775
C 1786.2
(2.7)
P 		1820.9
(3)
P 		1529.3
(0.9)
P 		1626.1
(1.6)
P 		1146.5
(-1.9)
P 		994.6
(-3)
P 		826
avr 1663.5
(1.5) 		1769.6
(2.3) 		1876.1
(3) 		1448.9
(0.1) 		1060.4
(-2.6) 		997.1
(-3) 		879
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 180.7
(3)
P 		77
(-1.9)
P 		53.7
(-3)
P 		149
(1.5)
P 		127
B 157.8
(1.6)
P 		104.9
(-1)
P 		64.6
(-3)
P 		187.1
(3)
P 		123
C 204.9
(3)
P 		97.3
(-3)
P 		119.9
(-1.7)
P 		183.1
(1.8)
P 		108
avr 181.1
(3) 		93.1
(-2.2) 		79.4
(-3) 		173.1
(2.5) 		102

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 435
1 2 3 4 5 6 range
A 252
(-2.6)
P 		589.9
(3)
P 		494.4
(1.4)
P 		355.4
(-0.9)
P 		265.5
(-2.4)
P 		227.5
(-3)
P 		362
B 639.3
(3)
P 		608.9
(2.4)
P 		444.1
(-1)
P 		349.4
(-3)
P 		469.3
(-0.5)
P 		396.1
(-2)
P 		290
C 662.1
(3)
P 		555.6
(1.1)
P 		389.2
(-1.9)
P 		327
(-3)
P 		371
(-2.2)
P 		332.9
(-2.9)
P 		335
avr 517.8
(1.5) 		584.8
(3) 		442.6
(-0.2) 		343.9
(-2.4) 		368.6
(-1.9) 		318.8
(-3) 		266
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185185_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11353
Sequence Type Exemplar sequence
Representative Public ID F59E11.7 NCBI
Target Description F59E11.7 /REP_DB=WormBase Gene ID /WP=CE11508 /TR=O16759 /GB=AAG24143.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182352(11), NM_072922(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182352 NCBI Caenorhabditis elegans F59E11.7b (F59E11.7) mRNA, complete cds. 11/11 None
NM_072922 NCBI Caenorhabditis elegans F59E11.7a (F59E11.7) mRNA, complete cds. 10/11 None
GENEFINDER00000037891 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8993205:8994148:1 10/11 None
F59E11.7b ENSEMBL cdna:known chromosome:CEL140:V:8993121:8993858:1 gene:F59E11.7 11/11 None
F59E11.7a ENSEMBL cdna:known chromosome:CEL140:V:8993128:8994151:1 gene:F59E11.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8993205-8993857(+) 100.0 100.0
Public Domain and Genome References
Ensembl F59E11.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24143 Hypothetical protein F59E11.7a [Caenorhabditis elegans] ref|NP_505323.1| F59E11.7a [Caenorhabditis elegans] 8.0E-97
blast AAO12416 Hypothetical protein F59E11.7b [Caenorhabditis elegans] ref|NP_872152.1| F59E11.7b [Caenorhabditis elegans] 4.0E-72
blast AAG24143 Hypothetical protein F59E11.7a [Caenorhabditis elegans] ref|NP_505323.1| F59E11.7a [Caenorhabditis elegans] 5.0E-70
blast AAG24143 Hypothetical protein F59E11.7a [Caenorhabditis elegans] ref|NP_505323.1| F59E11.7a [Caenorhabditis elegans] 1.0E-65
blast AAO12416 Hypothetical protein F59E11.7b [Caenorhabditis elegans] ref|NP_872152.1| F59E11.7b [Caenorhabditis elegans] 1.0E-65
blast AAO12416 Hypothetical protein F59E11.7b [Caenorhabditis elegans] ref|NP_872152.1| F59E11.7b [Caenorhabditis elegans] 2.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872152.1 1 7-29
NP_505323.1 1 7-29
F59E11.7b 1 7-29
F59E11.7a 1 7-29
GENEFINDER00000037891 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:185185_AT
tgaagcctaccactaaaaatattttaattggtctatcaattgtaatcactgttattttaa
ttgttcttctcatttcatttgttgttatttacgctatgaatgtagttgaacgtaatgaag
atcacaaaaagttaggacattgtgttcctttaattgactctgcaatcaaactggaaaact
cattcaactccacacatggatttttagaaaaacctacagaatacaaagccctcgctgatc
aatgtgataaagcaataagttgcgttggagttgtagactcgcatgtgtcagccgatatac
tgcatacattctcttcttgccaattttatgtattctacaaccaagattttgcagactgtg
caaacaagctattcgacaagaggaacgaagaaaaagcttgcttgcatactctattcaatg
attttcatggagtaggttatcgatttttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCCTACCACTAAAAATATTTT 674 571 14 Antisense
TGGTCTATCAATTGTAATCACTGTT 41 553 42 Antisense
TTAATTGTTCTTCTCATTTCATTTG 396 685 70 Antisense
TGTGTTCCTTTAATTGACTCTGCAA 92 555 154 Antisense
AAAACTCATTCAACTCCACACATGG 297 131 188 Antisense
ACCTACAGAATACAAAGCCCTCGCT 271 87 225 Antisense
ATACAAAGCCCTCGCTGATCAATGT 115 25 234 Antisense
AGTTGCGTTGGAGTTGTAGACTCGC 290 59 271 Antisense
GTAGACTCGCATGTGTCAGCCGATA 408 457 286 Antisense
ATGTGTCAGCCGATATACTGCATAC 545 49 296 Antisense
ATGGAGTAGGTTATCGATTTTTCAA 297 3 440 Antisense
Sequence Source Affymetrix Proprietary Database