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[185184_at]

Description Y57G11B.5 /REP_DB=WormBase Gene ID /WP=CE14924 /TR=O18224 /GB=CAB16499.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 18      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 3.9
(-3)
A 		5.4
(-2.8)
A 		6.6
(-2.6)
A 		42.3
(3)
A 		38
B 3.7
(-2.8)
A 		27.1
(3)
A 		4
(-2.8)
A 		3
(-3)
A 		24
C 3.3
(-2.9)
A 		8.8
(-2.1)
A 		2.5
(-3)
A 		45.4
(3)
A 		43
avr 3.6
(-3) 		13.8
(-0.7) 		4.4
(-2.8) 		30.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 838
1 2 3 4 5 6 range
A 9.2
(-2.9)
A 		2.7
(-3)
A 		31
(-2.8)
A 		18.6
(-2.9)
A 		720.3
(3)
P 		337.8
(-0.2)
P 		718
B 4
(-3)
A 		2.5
(-3)
A 		5.5
(-3)
A 		4.4
(-3)
A 		840.8
(3)
P 		426.2
(0)
P 		838
C 3.3
(-3)
A 		16.7
(-2.9)
A 		10.3
(-2.9)
A 		60.3
(-2.6)
A 		828.5
(3)
P 		416.1
(0)
P 		825
avr 5.5
(-3) 		7.3
(-3) 		15.6
(-2.9) 		27.8
(-2.8) 		796.5
(3) 		393.4
(-0.1) 		791
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-2.8)
A 		1.2
(-3)
A 		1.7
(-2.4)
A 		6.2
(3)
A 		5
B 1.2
(-2.4)
A 		6.7
(3)
A 		0.9
(-2.7)
A 		0.6
(-3)
A 		6
C 1.1
(-2.8)
A 		2.5
(-1.6)
A 		0.9
(-3)
A 		7.7
(3)
A 		7
avr 1.2
(-3) 		3.5
(0.8) 		1.2
(-3) 		4.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 1.7
(-3)
A 		1
(-3)
A 		6.7
(-2.8)
A 		4.7
(-2.9)
A 		217.4
(3)
P 		82.2
(-0.7)
P 		216
B 1.4
(-3)
A 		0.8
(-3)
A 		1.3
(-3)
A 		1.2
(-3)
A 		341.6
(3)
P 		158.9
(-0.2)
P 		341
C 1.2
(-3)
A 		5.1
(-2.9)
A 		2.6
(-3)
A 		12.1
(-2.8)
A 		268.1
(3)
P 		139.3
(0.1)
P 		267
avr 1.4
(-3) 		2.3
(-3) 		3.5
(-3) 		6
(-2.9) 		275.7
(3) 		126.8
(-0.3) 		274
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185184_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8413
Sequence Type Exemplar sequence
Representative Public ID Y57G11B.5 NCBI
Target Description Y57G11B.5 /REP_DB=WormBase Gene ID /WP=CE14924 /TR=O18224 /GB=CAB16499.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070368 NCBI Caenorhabditis elegans Y57G11B.5 (Y57G11B.5) mRNA, complete cds. 11/11 None
SNAP00000021640 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14574791:14576506:1 11/11 None
GENEFINDER00000021645 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14574791:14576506:1 11/11 None
Y57G11B.5 ENSEMBL cdna:known chromosome:CEL140:IV:14574791:14576506:1 gene:Y57G11B.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14574796-14576512(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11B.5
Entrez Gene 178391 Entrez gene
SwissProt O18224 EMBL-EBI
WormBase CE14924 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB16499 Hypothetical protein Y57G11B.5 [Caenorhabditis elegans] ref|NP_502769.1| Y57G11B.5 [Caenorhabditis elegans] 1.0E-126
blast CAE73938 Hypothetical protein CBG21559 [Caenorhabditis briggsae] 2.0E-37
Sequence
Target Sequence 
>C. ELEGANS:185184_AT
gtcttctatgaccactgccattgacaggatcgaccaaattttccaagccgaagatagtac
accagcttgtaatgccgagacgagaagattcaacgcttgttttaaggatattaatgagaa
atcccgtctcgaaatgttccaagatgttaccaaattcccatcaaaatccgaagtacttga
gtcagtcgcagatatccgtaaggcattgaagtgtgcaggagaaccagtgtgcagcaagca
gaagttgacaaaatacgcaagtgaattggtgatatatgctggggagaagatctacggaga
aggattcggatgtgtgaatcagaatgatatggtccgtttctacactgcttgtgtgctttc
tgaagttccaatggatcaacttcaaggctttaccttcaaaacagtgcttcaatacgcgaa
accagtcacaagttgcttcgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTTCTATGACCACTGCCATTGAC 221 469 69 Antisense
GGATCGACCAAATTTTCCAAGCCGA 491 511 95 Antisense
ACACCAGCTTGTAATGCCGAGACGA 476 109 127 Antisense
AATCCCGTCTCGAAATGTTCCAAGA 219 169 188 Antisense
GTCAGTCGCAGATATCCGTAAGGCA 517 465 249 Antisense
AGGAGAACCAGTGTGCAGCAAGCAG 272 55 285 Antisense
ATGATATGGTCCGTTTCTACACTGC 198 45 392 Antisense
TCTACACTGCTTGTGTGCTTTCTGA 493 613 407 Antisense
GGCTTTACCTTCAAAACAGTGCTTC 585 505 454 Antisense
AGTGCTTCAATACGCGAAACCAGTC 706 59 471 Antisense
GAAACCAGTCACAAGTTGCTTCGCT 699 357 486 Antisense
Sequence Source Affymetrix Proprietary Database