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[185183_s_at]

Description T22B11.4 /REP_DB=WormBase Gene ID /WP=CE17243 /TR=O44561 /GB=AAB94184.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 06      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 856
1 2 3 4 range
A 933
(3)
P 		542.4
(-0.4)
P 		251.3
(-3)
P 		469.9
(-1.1)
P 		682
B 1107.6
(3)
P 		440.6
(-2.6)
P 		493.6
(-2.2)
P 		396.2
(-3)
P 		711
C 955.4
(3)
P 		703.6
(0.5)
P 		353.2
(-3)
P 		466.3
(-1.9)
P 		602
avr 998.7
(3) 		562.2
(-1.1) 		366
(-3) 		444.1
(-2.3) 		633

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 744
1 2 3 4 5 6 range
A 862.9
(3)
P 		721.7
(1.7)
P 		368.7
(-1.7)
P 		297.6
(-2.4)
P 		267.2
(-2.6)
P 		229.1
(-3)
P 		634
B 876.6
(3)
P 		592.3
(0.6)
P 		432.6
(-0.7)
P 		294.9
(-1.9)
P 		164.4
(-3)
P 		277
(-2.1)
P 		712
C 908.8
(3)
P 		552.9
(-0.1)
P 		398.6
(-1.4)
P 		300.9
(-2.2)
P 		369.7
(-1.6)
P 		209.3
(-3)
P 		700
avr 882.8
(3) 		622.3
(0.6) 		400
(-1.5) 		297.8
(-2.4) 		267.1
(-2.7) 		238.5
(-3) 		644
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 288
1 2 3 4 range
A 339.7
(3)
P 		117.7
(-1.9)
P 		65.7
(-3)
P 		68.8
(-2.9)
P 		274
B 353.2
(3)
P 		108.8
(-2.5)
P 		114.4
(-2.3)
P 		84.4
(-3)
P 		269
C 316.3
(3)
P 		202.3
(0.1)
P 		123.1
(-1.9)
P 		78.6
(-3)
P 		238
avr 336.4
(3) 		142.9
(-1.5) 		101.1
(-2.4) 		77.3
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 159.1
(0.1)
P 		256.7
(3)
P 		80.3
(-2.3)
P 		75.5
(-2.4)
P 		80.6
(-2.3)
P 		55.8
(-3)
P 		201
B 305
(3)
P 		197.2
(0.3)
P 		105.1
(-2)
P 		78.1
(-2.7)
P 		66.8
(-3)
P 		103.3
(-2.1)
P 		238
C 336.8
(3)
P 		168.7
(-0.7)
P 		101.4
(-2.1)
P 		60.5
(-3)
P 		119.6
(-1.7)
P 		70.1
(-2.8)
P 		276
avr 267
(3) 		207.5
(1.2) 		95.6
(-2.3) 		71.4
(-3) 		89
(-2.5) 		76.4
(-2.8) 		196
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185183_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10865
Sequence Type Exemplar sequence
Representative Public ID T22B11.4 NCBI
Target Description T22B11.4 /REP_DB=WormBase Gene ID /WP=CE17243 /TR=O44561 /GB=AAB94184.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028223(10), NM_001028222(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028223 NCBI Caenorhabditis elegans T22B11.4b (T22B11.4) mRNA, complete cds. 10/11 None
NM_001028222 NCBI Caenorhabditis elegans T22B11.4a (T22B11.4) mRNA, complete cds. 11/11 None
SNAP00000042283 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4679034:4685100:1 11/11 None
GENEFINDER00000042288 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4679034:4685100:1 11/11 None
T22B11.4b ENSEMBL cdna:known chromosome:CEL140:IV:4679009:4681684:1 gene:T22B11.4 10/11 None
T22B11.4a ENSEMBL cdna:known chromosome:CEL140:IV:4679034:4682586:1 gene:T22B11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4679039-4682321(+) 86.94 100.0
Public Domain and Genome References
Ensembl T22B11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94184 Hypothetical protein T22B11.4a [Caenorhabditis elegans] ref|NP_001023393.1| T22B11.4a [Caenorhabditis elegans] 0.0
blast AAO91670 Hypothetical protein T22B11.4b [Caenorhabditis elegans] ref|NP_001023394.1| T22B11.4b [Caenorhabditis elegans] 0.0
blast AAB94183 Hypothetical protein T22B11.3 [Caenorhabditis elegans] ref|NP_500614.1| T22B11.3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.9E-4
Pfam IPR000719 EMBL-EBI Protein kinase 2.9E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023394.1 1 491-513
NP_001023393.1 1 491-513
T22B11.4b 1 491-513
T22B11.4a 1 491-513
Sequence
Target Sequence 
>C. ELEGANS:185183_S_AT
caactaccacatccgaagacgacgaggagaaggattccaactccgacgaagatgaagatg
aggaatctaccaccgtggagcttgtcgagggagaaaccccagacccatccgagcagaact
tcttgcaacgaatctactattcgccagattacctgagagtccgtaatattaccatcgcca
ctctcattatcttcgccgtgttctgttctctcgggctctgctgcatctacaaaaacaagt
gttgcaagagcaaggaatccaagacatcaaatggttaccgctacacgtcagctaatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACTACCACATCCGAAGACGACGA 602 185 1325 Antisense
AGGAGAAGGATTCCAACTCCGACGA 178 57 1349 Antisense
GATGAGGAATCTACCACCGTGGAGC 265 411 1381 Antisense
TACCACCGTGGAGCTTGTCGAGGGA 710 649 1392 Antisense
TGTCGAGGGAGAAACCCCAGACCCA 97 553 1407 Antisense
ACCCATCCGAGCAGAACTTCTTGCA 545 89 1427 Antisense
GAACTTCTTGCAACGAATCTACTAT 206 351 1440 Antisense
TTCGCCAGATTACCTGAGAGTCCGT 568 695 1464 Antisense
GAGTCCGTAATATTACCATCGCCAC 111 399 1481 Antisense
GGGCTCTGCTGCATCTACAAAAACA 456 491 1537 Antisense
GTTACCGCTACACGTCAGCTAATCC 593 445 1598 Antisense
Sequence Source Affymetrix Proprietary Database