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[185182_s_at]

Description T10E10.4 /REP_DB=WormBase Gene ID /WP=CE25989 /TR=Q22378 /GB=AAA80360.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 47      6grp_total > 48      4grp_total > 49      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 28.7
(-3)
A 		296.9
(3)
P 		245.7
(1.9)
P 		43.1
(-2.7)
A 		268
B 43.4
(-2.3)
A 		288.3
(3)
P 		247.6
(2.1)
P 		10.5
(-3)
A 		278
C 45.9
(-3)
A 		241.8
(3)
P 		199.2
(1.7)
P 		90.2
(-1.6)
P 		196
avr 39.3
(-3) 		275.7
(3) 		230.8
(1.9) 		47.9
(-2.8) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 149.3
(3)
P 		122.3
(-3)
P 		132
(-0.8)
M 		147.7
(2.6)
P 		138.5
(0.6)
P 		143.4
(1.7)
P 		27
B 179.8
(3)
P 		157.1
(1.1)
P 		106.3
(-3)
P 		120
(-1.9)
P 		126
(-1.4)
P 		177.4
(2.8)
P 		74
C 146.5
(2.5)
P 		107.2
(-2.8)
P 		135.6
(1.1)
P 		126.4
(-0.2)
P 		105.5
(-3)
P 		149.9
(3)
P 		44
avr 158.5
(3) 		128.9
(-2) 		124.6
(-2.8) 		131.4
(-1.6) 		123.3
(-3) 		156.9
(2.7) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 10.5
(-2.6)
A 		64.4
(3)
P 		64.2
(3)
P 		6.3
(-3)
A 		58
B 13.9
(-2)
A 		71.2
(3)
P 		57.4
(1.8)
P 		2.2
(-3)
A 		69
C 15.2
(-3)
A 		69.5
(3)
P 		69.4
(3)
P 		15.2
(-3)
P 		54
avr 13.2
(-2.5) 		68.4
(3) 		63.7
(2.5) 		7.9
(-3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 27.5
(-3)
P 		43.5
(3)
P 		28.7
(-2.6)
M 		37.4
(0.7)
P 		41.8
(2.4)
P 		34.9
(-0.2)
P 		16
B 62.6
(2.5)
P 		52.3
(0.9)
P 		25.8
(-3)
P 		31.8
(-2.1)
P 		51.2
(0.8)
P 		66.2
(3)
P 		40
C 54.3
(3)
P 		32.7
(-1.5)
P 		34.5
(-1.1)
P 		25.4
(-3)
P 		34.1
(-1.2)
P 		50.2
(2.1)
P 		29
avr 48.1
(2.3) 		42.8
(0.8) 		29.7
(-3) 		31.5
(-2.5) 		42.4
(0.7) 		50.4
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185182_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16088
Sequence Type Exemplar sequence
Representative Public ID T10E10.4 NCBI
Target Description T10E10.4 /REP_DB=WormBase Gene ID /WP=CE25989 /TR=Q22378 /GB=AAA80360.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076657 NCBI Caenorhabditis elegans T10E10.4 (T10E10.4) mRNA, complete cds. 11/11 None
SNAP00000029182 ENSEMBL cdna:SNAP chromosome:CEL140:X:6314589:6318812:-1 11/11 None
GENEFINDER00000029191 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6314589:6319795:-1 11/11 None
T10E10.4 ENSEMBL cdna:known chromosome:CEL140:X:6314496:6322775:-1 gene:T10E10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6314588-6322775(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T10E10.4
Entrez Gene 180906 Entrez gene
SwissProt Q22378 EMBL-EBI
WormBase CE25989 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6030 chitin metabolism inferred from electronic annotation QuickGO AmiGO
6633 fatty acid biosynthesis inferred from electronic annotation QuickGO AmiGO
9405 pathogenesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
8061 chitin binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80360 Hypothetical protein T10E10.4 [Caenorhabditis elegans] ref|NP_509058.1| T10E10.4 [Caenorhabditis elegans] 0.0
blast CAE61236 Hypothetical protein CBG05036 [Caenorhabditis briggsae] 0.0
blast B88553 protein K04H4.2b [imported] - Caenorhabditis elegans 4.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.7E-9
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.2E-5
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.7E-9
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.2E-5
Pfam IPR006149 EMBL-EBI Nematode-specific EB region 6.7E-9
Pfam IPR002557 EMBL-EBI Chitin binding Peritrophin-A 4.2E-5
Sequence
Target Sequence 
>C. ELEGANS:185182_S_AT
aatggattccaaagcacgtgcgcacaatgtgttcaagaagtttgttcatgtgtcaatggg
gcagcgtcgaatggagcaacgtgtgaacaaatggcaccgacagttttgacgttggcaaga
aacggatgtgatcaatatggttctccatgcaaattccttttgtcgacagcacgacgacgc
ccactttttgcaccgattggcaatatgactgaaactccactgttcttcaacgtggcatcc
aaaagaaaatgtgtcgccaacattcaaaattttgatgccgactcaacatgtcttccaaac
gaaaaatgtattgacggagaatgcaggatgaaactgtggcctggagaatacggttgccaa
accgacattgaatgccagtctagatgcccgaacacctactgcgaaaagaagaagagtgat
aaaaatgttccacaatgccaatgcacgaatggaatgcttctctatggaagatgcttctcc
cagtgtccacgaggattccacgagtctggagcattctgtatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGGATTCCAAAGCACGTGCGCAC 262 163 2311 Antisense
CATGTGTCAATGGGGCAGCGTCGAA 588 209 2357 Antisense
TGGCACCGACAGTTTTGACGTTGGC 40 547 2402 Antisense
TGGTTCTCCATGCAAATTCCTTTTG 266 551 2448 Antisense
TTTTGTCGACAGCACGACGACGCCC 161 675 2468 Antisense
TGCCGACTCAACATGTCTTCCAAAC 613 585 2586 Antisense
GGTTGCCAAACCGACATTGAATGCC 214 505 2662 Antisense
TTGAATGCCAGTCTAGATGCCCGAA 666 683 2678 Antisense
TGCCCGAACACCTACTGCGAAAAGA 472 585 2695 Antisense
CCAGTGTCCACGAGGATTCCACGAG 311 271 2790 Antisense
CCACGAGTCTGGAGCATTCTGTATG 446 273 2808 Antisense
Sequence Source Affymetrix Proprietary Database