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[185181_at]

Description Y105E8A.A /REP_DB=WormBase Gene ID /WP=CE24087 /TR=Q9NF24 /GB=CAB60841.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 46      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 336.5
(3)
P 		162.8
(-1.1)
P 		126.1
(-2)
A 		82.3
(-3)
A 		254
B 348.1
(3)
P 		138.4
(-1.4)
A 		122.9
(-1.7)
A 		59.3
(-3)
A 		289
C 370.9
(3)
P 		151.3
(-1.3)
A 		80
(-2.6)
A 		61.5
(-3)
A 		309
avr 351.8
(3) 		150.8
(-1.2) 		109.7
(-2.1) 		67.7
(-3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 259
1 2 3 4 5 6 range
A 297.6
(3)
P 		130.4
(-0.9)
P 		113.8
(-1.3)
P 		74.4
(-2.2)
A 		39.3
(-3)
A 		56.1
(-2.6)
A 		258
B 279
(3)
P 		191.2
(0.8)
P 		88.2
(-1.8)
M 		63
(-2.4)
A 		38.9
(-3)
A 		58.4
(-2.5)
A 		240
C 223.7
(1.2)
P 		292.5
(3)
P 		136.9
(-1)
A 		74.3
(-2.7)
A 		99.8
(-2)
A 		61.2
(-3)
A 		231
avr 266.8
(3) 		204.7
(1.2) 		113
(-1.4) 		70.6
(-2.7) 		59.3
(-3) 		58.6
(-3) 		208
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 122.5
(3)
P 		35.3
(-1.7)
P 		33
(-1.9)
A 		12
(-3)
A 		111
B 111
(3)
P 		34.2
(-1.7)
A 		28.5
(-2)
A 		12.6
(-3)
A 		98
C 122.8
(3)
P 		43.5
(-1.2)
A 		27.9
(-2.1)
A 		10.4
(-3)
A 		112
avr 118.8
(3) 		37.7
(-1.5) 		29.8
(-2) 		11.7
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 54.9
(3)
P 		46.4
(1.8)
P 		24.8
(-1.2)
P 		18.9
(-2)
A 		11.8
(-3)
A 		13.7
(-2.7)
A 		43
B 97.1
(3)
P 		63.7
(0.5)
P 		21.4
(-2.6)
M 		16.7
(-2.9)
A 		15.8
(-3)
A 		21.8
(-2.6)
A 		81
C 82.9
(2.5)
P 		89.3
(3)
P 		34.8
(-1.4)
A 		14.9
(-3)
A 		32.3
(-1.6)
A 		20.5
(-2.5)
A 		74
avr 78.3
(3) 		66.5
(1.8) 		27
(-2) 		16.8
(-3) 		20
(-2.7) 		18.7
(-2.8) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185181_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18790
Sequence Type Exemplar sequence
Representative Public ID Y105E8A.A NCBI
Target Description Y105E8A.A /REP_DB=WormBase Gene ID /WP=CE24087 /TR=Q9NF24 /GB=CAB60841.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000013509 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14341435:14347834:1 11/11 None
SNAP00000013317 ENSEMBL cdna:SNAP chromosome:CEL140:I:14342460:14347834:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14341365-14347765(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE64123 Hypothetical protein CBG08739 [Caenorhabditis briggsae] 0.0
blast XP_395725 PREDICTED: similar to CG32473-PA, isoform A [Apis mellifera] 1.0E-118
blast AAN13553 CG32473-PC, isoform C [Drosophila melanogaster] ref|NP_731787.1| CG32473-PC, isoform C [Drosophila melanogaster] 1.0E-112
blast XP_395725 PREDICTED: similar to CG32473-PA, isoform A [Apis mellifera] 1.0E-100
blast AAN13553 CG32473-PC, isoform C [Drosophila melanogaster] ref|NP_731787.1| CG32473-PC, isoform C [Drosophila melanogaster] 2.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-126
Pfam IPR001930 EMBL-EBI Peptidase M1, membrane alanine aminopeptidase 1.0E-94
Sequence
Target Sequence 
>C. ELEGANS:185181_AT
tccgaaaccccgagcatcatatgatagcccttatggagggtgtgaagcagggtgaaacaa
cggcctgggagcggatatggaaggcttataagactgcaacaagcccatcggagaagaata
atattattggggcattgacgagtaccaaggatgcttcactgattaacagactcctcaagt
actgcctggacgggaagatcaaggcgaacctgattccacgtgtgttctcctacttctcac
taaaccagtctacaaggaacattgtctggaaatttttcaaaacgcattttgaacagtttc
atggaatactcgggaagggatcgttgatggccagttgtgtgaagtgtctcgccgagccat
tgagcactgaaaccgagttggaggaggtgaaggagttcctgaagagtcagaagttcgccg
aagacggtctcatcaaaatggagatgacttacgagcaaatcgagctgaacatccaatggc
gaaaactcaatgaaggccagctgggcaagtggatcagcagatgggatgagcgtagacgga
cactgtacagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGAAACCCCGAGCATCATATGAT 303 595 1763 Antisense
GAAACAACGGCCTGGGAGCGGATAT 428 355 1816 Antisense
AGACTGCAACAAGCCCATCGGAGAA 476 69 1853 Antisense
TAACAGACTCCTCAAGTACTGCCTG 196 639 1926 Antisense
GCGAACCTGATTCCACGTGTGTTCT 459 289 1966 Antisense
CCTACTTCTCACTAAACCAGTCTAC 244 269 1991 Antisense
CCAGTTGTGTGAAGTGTCTCGCCGA 162 271 2093 Antisense
TCGCCGAGCCATTGAGCACTGAAAC 401 597 2111 Antisense
GAAGTTCGCCGAAGACGGTCTCATC 642 335 2172 Antisense
GAAGGCCAGCTGGGCAAGTGGATCA 159 333 2254 Antisense
GAGCGTAGACGGACACTGTACAGAC 107 387 2290 Antisense
Sequence Source Affymetrix Proprietary Database