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[185179_s_at]

Description K11D12.2 /REP_DB=WormBase Gene ID /WP=CE12128 /TR=O44625 /GB=AAB94230.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 96      4grp_highest_8_8 > 30      4grp_high_8_8 > 07      6grp_highest_nonorm > 82      6grp_total > 86      4grp_total > 01      6grp_highest_sub > In      6grp_cgc > 68      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 536
1 2 3 4 range
A 436.9
(-1.4)
P 		359.8
(-2.5)
P 		324.3
(-3)
P 		760
(3)
P 		436
B 422.3
(-0.8)
P 		264.8
(-3)
P 		371.9
(-1.5)
P 		687.5
(3)
P 		423
C 279.8
(-2.3)
P 		224
(-3)
P 		346.1
(-1.6)
P 		729.7
(3)
P 		506
avr 379.7
(-1.7) 		282.9
(-3) 		347.4
(-2.1) 		725.7
(3) 		443

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 353
1 2 3 4 5 6 range
A 152
(-3)
P 		352.9
(0.4)
P 		314.6
(-0.2)
P 		435
(1.8)
P 		363.8
(0.6)
P 		504.6
(3)
P 		353
B 314.5
(-2.6)
P 		303.8
(-3)
P 		308.1
(-2.8)
P 		351.7
(-1)
P 		365.4
(-0.5)
P 		449.4
(3)
P 		146
C 409.4
(1.3)
P 		197.3
(-3)
P 		355
(0.2)
P 		296.5
(-1)
P 		473.2
(2.6)
P 		493
(3)
P 		296
avr 292
(-2.8) 		284.7
(-3) 		325.9
(-1.7) 		361.1
(-0.7) 		400.8
(0.5) 		482.3
(3) 		198
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 159.1
(3)
P 		78.1
(-3)
P 		84.8
(-2.5)
P 		111.3
(-0.5)
P 		81
B 134.7
(2.1)
P 		65.4
(-3)
P 		86.2
(-1.5)
P 		146.5
(3)
P 		81
C 92.6
(-0.1)
P 		64.4
(-3)
P 		120.6
(2.8)
P 		123
(3)
P 		59
avr 128.8
(3) 		69.3
(-3) 		97.2
(-0.2) 		126.9
(2.8) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 28
(-3)
P 		125.5
(3)
P 		68.5
(-0.5)
P 		110.3
(2.1)
P 		109.8
(2)
P 		122.9
(2.8)
P 		98
B 109.4
(-0.8)
P 		101.1
(-1.3)
P 		74.8
(-3)
P 		93.2
(-1.8)
P 		148.5
(1.8)
P 		167.6
(3)
P 		93
C 151.8
(2.2)
P 		60.2
(-3)
P 		90.3
(-1.3)
P 		59.6
(-3)
P 		153.1
(2.3)
P 		165
(3)
P 		105
avr 96.4
(-1.5) 		95.6
(-1.6) 		77.9
(-3) 		87.7
(-2.2) 		137.1
(1.8) 		151.8
(3) 		74
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185179_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14787
Sequence Type Exemplar sequence
Representative Public ID K11D12.2 NCBI
Target Description K11D12.2 /REP_DB=WormBase Gene ID /WP=CE12128 /TR=O44625 /GB=AAB94230.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071954 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-51) (pqn-51) mRNA, complete cds. 11/11 None
SNAP00000023429 ENSEMBL cdna:SNAP chromosome:CEL140:V:5049988:5051616:1 11/11 None
GENEFINDER00000023433 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5049988:5051616:1 11/11 None
K11D12.2.2 ENSEMBL cdna:known chromosome:CEL140:V:5049367:5052020:1 gene:K11D12.2 11/11 None
K11D12.2.1 ENSEMBL cdna:known chromosome:CEL140:V:5049420:5052020:1 gene:K11D12.2 11/11 None
K11D12.2.3 ENSEMBL cdna:known chromosome:CEL140:V:5049556:5052020:1 gene:K11D12.2 11/11 None
K11D12.2.4 ENSEMBL cdna:known chromosome:CEL140:V:5049969:5051988:1 gene:K11D12.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5049987-5051616(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-51
Ensembl K11D12.2
Entrez Gene 178893 Entrez gene
SwissProt O44625 EMBL-EBI
WormBase CE12128 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261079_S_AT transcription factor IIA large subunit, putative / TFIIA large subunit, putative at
ATGENOME1:19169_G_AT transcription factor IIA large subunit, putative / TFIIA large subunit, putative at
ATGENOME1:19168_AT transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L) at
CANINE_2:CFAAFFX.26476.1.S1_AT similar to Transcription initiation factor IIA subunit 1 (General transcription factor IIA1) (TFIIA-42) (TFIIAL) cfa
DROSOPHILA_2:1624570_A_AT Transcription factor IIA L dm
DROSGENOME1:154233_AT Transcription factor IIA L dm
CHICKEN:GGA.5366.1.S1_AT general transcription factor IIA, 1, 19/37kDa gga
CHICKEN:GGAAFFX.21558.1.S1_S_AT general transcription factor IIA, 1, 19/37kDa gga
CHICKEN:GGAAFFX.6685.1.S1_AT general transcription factor IIA, 1, 19/37kDa gga
HG-U133_PLUS_2:206521_S_AT general transcription factor IIA, 1, 19/37kDa hs
HG-U133A:206521_S_AT general transcription factor IIA, 1, 19/37kDa hs
HG-FOCUS:206521_S_AT general transcription factor IIA, 1, 19/37kDa hs
HG-U133A_2:206521_S_AT general transcription factor IIA, 1, 19/37kDa hs
U133_X3P:G7706734_3P_A_AT general transcription factor IIA, 1, 19/37kDa hs
HG-U95AV2:35495_AT general transcription factor IIA, 1, 19/37kDa hs
HU35KSUBA:RC_AA234995_AT General transcription factor IIA, 1, 19/37kDa hs
HU35KSUBD:RC_AA398546_AT General transcription factor IIA, 1, 19/37kDa hs
HU35KSUBD:RC_AA490325_AT General transcription factor IIA, 1, 19/37kDa hs
U133_X3P:HS2.369832.1.S1_3P_S_AT General transcription factor IIA, 1, 19/37kDa hs
U133_X3P:HS.299542.0.S1_3P_AT General transcription factor IIA, 1, 19/37kDa hs
HG-U133_PLUS_2:1559009_AT General transcription factor IIA, 1, 19/37kDa hs
HG-U133_PLUS_2:225433_AT General transcription factor IIA, 1, 19/37kDa hs
HG-U133B:225433_AT General transcription factor IIA, 1, 19/37kDa hs
HG-U95B:44152_AT General transcription factor IIA, 1, 19/37kDa hs
HG-U95C:61385_AT General transcription factor IIA, 1, 19/37kDa hs
HG-U95C:63087_AT General transcription factor IIA, 1, 19/37kDa hs
HG-U95D:68303_AT General transcription factor IIA, 1, 19/37kDa hs
HG-U95E:69916_AT General transcription factor IIA, 1, 19/37kDa hs
HG-U95E:80266_AT General transcription factor IIA, 1, 19/37kDa hs
MOUSE430_2:1421357_AT general transcription factor II A, 1 mm
MOE430A:1421357_AT general transcription factor II A, 1 mm
MOUSE430A_2:1421357_AT general transcription factor II A, 1 mm
MOE430A:1433511_AT General transcription factor II A, 1 (Gtf2a1), transcript variant 1, mRNA mm
MOUSE430A_2:1433511_AT General transcription factor II A, 1 (Gtf2a1), transcript variant 1, mRNA mm
MOUSE430_2:1433511_AT General transcription factor II A, 1 (Gtf2a1), transcript variant 1, mRNA mm
MG-U74BV2:163390_R_AT General transcription factor II A, 1 (Gtf2a1), transcript variant 1, mRNA mm
MU19KSUBB:TC34074_AT General transcription factor II A, 1 (Gtf2a1), transcript variant 1, mRNA mm
MU19KSUBC:TC41183_AT General transcription factor II A, 1 (Gtf2a1), transcript variant 1, mRNA mm
RG-U34A:AF000943_AT general transcription factor 2a, 1 rn
RAE230A:1369548_AT general transcription factor 2a, 1 rn
RAT230_2:1369548_AT general transcription factor 2a, 1 rn
YEAST_2:1779367_AT TFIIA large subunit; involved in transcriptional activation, acts as antirepressor or as coactivator; homologous to largest and second largest subunits of human and Drosophila TFIIA Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6367 transcription initiation from RNA polymerase II promoter inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16986 transcription initiation factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504355 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-51) [Caenorhabditis elegans] gb|AAB94230.1| Prion-like-(q/n-rich)-domain-bearing protein protein 51 [Caenorhabditis elegans] 1.0E-150
blast CAE64058 Hypothetical protein CBG08658 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR004855 EMBL-EBI Transcription factor IIA, alpha/beta subunit 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185179_S_AT
gccgaatcagattccacagcatcgaattattcatcaaggacagccacaacaggctcagca
gcagcagcctcaacagggcaatcaacttacccatatgaatcaaatggacggaaatgtggg
atccgaatcagacggagaaggacctagtggacctgtaaaacttgctccaaaaaagacaaa
gtgctcattgagagtccgtggaagtggagcaagtgagaagaaagcgatgaaagtcttggg
atcactattgaaagactttcaactcgacggaggtggcggtggaatgtctgattcttccag
tgaagatgagcctgacgatgatgatgatccacttcgaagaatcgctgatcgcatgggaaa
tggtgaagttgaagatggagatcaagtggcagaagaggaaccattgaattctgaagatga
tcaatcagacgatgaagatttgacgatgctattcgaggcggacaatgttgtcatgtgcca
gttcgagaaggtgaatcgtgcccgtaccaagtggaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGAATCAGATTCCACAGCATCGA 288 285 480 Antisense
AGGACAGCCACAACAGGCTCAGCAG 561 55 516 Antisense
CAGCAGCCTCAACAGGGCAATCAAC 560 203 541 Antisense
GGCAATCAACTTACCCATATGAATC 276 535 556 Antisense
GAAAGACTTTCAACTCGACGGAGGT 691 357 729 Antisense
GAGGTGGCGGTGGAATGTCTGATTC 581 401 749 Antisense
GATGATCCACTTCGAAGAATCGCTG 6 411 802 Antisense
GAATCGCTGATCGCATGGGAAATGG 539 325 818 Antisense
GATGCTATTCGAGGCGGACAATGTT 325 413 924 Antisense
AATGTTGTCATGTGCCAGTTCGAGA 86 163 943 Antisense
AATCGTGCCCGTACCAAGTGGAAGT 190 163 973 Antisense
Sequence Source Affymetrix Proprietary Database