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[185178_at]

Description F07C4.10 /REP_DB=WormBase Gene ID /WP=CE09209 /TR=P91215 /GB=AAG24041.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 55      6grp_total > 73      4grp_total > 44      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 100.8
(-3)
P 		138
(3)
P 		125.8
(1)
P 		120.4
(0.2)
A 		37
B 135.4
(3)
P 		124.8
(2.1)
P 		68.2
(-3)
A 		79.7
(-2)
A 		67
C 136.9
(3)
P 		130.1
(2.6)
P 		92.6
(0.4)
P 		35.9
(-3)
A 		101
avr 124.4
(2.2) 		131
(3) 		95.5
(-1.1) 		78.7
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 106.8
(0.8)
P 		88.9
(-1.3)
P 		99.8
(-0)
P 		73.9
(-3)
A 		125.7
(3)
A 		98.5
(-0.2)
P 		52
B 68.5
(-3)
P 		88.3
(1.3)
P 		76.6
(-1.2)
P 		71.4
(-2.4)
P 		96
(3)
M 		72.2
(-2.2)
M 		28
C 80.6
(-2.6)
P 		78.7
(-2.8)
P 		126.6
(3)
M 		122
(2.4)
P 		77.4
(-3)
P 		90.7
(-1.4)
P 		49
avr 85.3
(-3) 		85.3
(-3) 		101
(3) 		89.1
(-1.5) 		99.7
(2.5) 		87.1
(-2.3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 36.7
(3)
P 		30
(0.9)
P 		32.9
(1.8)
P 		17.6
(-3)
A 		19
B 43.2
(3)
P 		30.8
(0.3)
P 		15.8
(-3)
A 		17
(-2.7)
A 		27
C 45.3
(3)
P 		37.4
(1.8)
P 		32.3
(1)
P 		6.1
(-3)
A 		39
avr 41.7
(3) 		32.7
(1.1) 		27
(-0.1) 		13.6
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 19.7
(-2.7)
P 		31.6
(1)
P 		21.7
(-2.1)
P 		18.7
(-3)
A 		37.9
(3)
A 		24
(-1.3)
P 		19
B 23.8
(-1.5)
P 		29.4
(0.2)
P 		18.6
(-3)
P 		18.9
(-2.9)
P 		39
(3)
M 		26.9
(-0.6)
M 		20
C 29.9
(1.3)
P 		24
(-3)
P 		32.2
(3)
M 		24.5
(-2.6)
P 		25
(-2.3)
P 		30.4
(1.7)
P 		8
avr 24.5
(-1.3) 		28.3
(0.4) 		24.2
(-1.4) 		20.7
(-3) 		34
(3) 		27.1
(-0.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185178_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11717
Sequence Type Exemplar sequence
Representative Public ID F07C4.10 NCBI
Target Description F07C4.10 /REP_DB=WormBase Gene ID /WP=CE09209 /TR=P91215 /GB=AAG24041.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072577(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072577 NCBI Caenorhabditis elegans F07C4.10 (F07C4.10) mRNA, complete cds. 11/11 None
SNAP00000003395 ENSEMBL cdna:SNAP chromosome:CEL140:V:7641536:7642609:-1 10/11 None
GENEFINDER00000003401 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7641523:7642461:-1 10/11 None
F07C4.10 ENSEMBL cdna:known chromosome:CEL140:V:7641536:7642461:-1 gene:F07C4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7641536-7642462(-) 96.51 100.0
Public Domain and Genome References
Gene Title
Ensembl F07C4.10
Entrez Gene 184133 Entrez gene
SwissProt P91215 EMBL-EBI
WormBase CE09209 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504978 F07C4.10 [Caenorhabditis elegans] gb|AAG24041.1| Hypothetical protein F07C4.10 [Caenorhabditis elegans] 1.0E-146
blast NP_504978 F07C4.10 [Caenorhabditis elegans] gb|AAG24041.1| Hypothetical protein F07C4.10 [Caenorhabditis elegans] 1.0E-114
blast NP_504978 F07C4.10 [Caenorhabditis elegans] gb|AAG24041.1| Hypothetical protein F07C4.10 [Caenorhabditis elegans] 1.0E-108
blast AAC69052 Hypothetical protein T05B4.12 [Caenorhabditis elegans] ref|NP_504149.1| T05B4.12 [Caenorhabditis elegans] 6.0E-83
blast CAE65453 Hypothetical protein CBG10418 [Caenorhabditis briggsae] 3.0E-81
blast AAC69052 Hypothetical protein T05B4.12 [Caenorhabditis elegans] ref|NP_504149.1| T05B4.12 [Caenorhabditis elegans] 2.0E-73
blast CAE65453 Hypothetical protein CBG10418 [Caenorhabditis briggsae] 2.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.3E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.7E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.7E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.3E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.7E-14
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.7E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.7E-4
Sequence
Target Sequence 
>C. ELEGANS:185178_AT
agatgcagcctgcaacgttctttacccaggagtcggatcaggccctccaggtgctgacga
gtttcaagacagacctctgccatgctatactacggataaagtaacaccagctgcaattgt
agaagatgtaaagagagcagctattgctagttgtcccaaaaattgcgggtattgctgtct
gacacccgactacaagtgctcaaatgtcgcatttcctcgtctaaactgtgcctccatcac
aaagacccaatgtaattcaattgcttggagaaccatcattgcacaagattgccccgcttc
atgtggattctgcaacatgggaggttgcgttgatgccgttacggattgtgcgaacgacgt
ctcaatttgcaatgtagttggattgcaagactttgtaaatcagtattgccagaaaacctg
cgcgagatgcccatctacaacggctacatccgctgttgctgctgctgttgctgctgcttc
agccccatgtacgacatattctcccgattcgagtccttcgtgcgctgcctgggctaagaa
tggattctgcacgaacttgtcttacac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGCAGCCTGCAACGTTCTTTAC 121 67 171 Antisense
TTTACCCAGGAGTCGGATCAGGCCC 534 657 191 Antisense
ACCTCTGCCATGCTATACTACGGAT 405 87 243 Antisense
AGCAGCTATTGCTAGTTGTCCCAAA 446 77 306 Antisense
CTGACACCCGACTACAAGTGCTCAA 5 239 349 Antisense
GCATTTCCTCGTCTAAACTGTGCCT 228 307 379 Antisense
AGGTTGCGTTGATGCCGTTACGGAT 600 57 492 Antisense
ATGCCCATCTACAACGGCTACATCC 490 41 597 Antisense
TACGACATATTCTCCCGATTCGAGT 525 647 660 Antisense
TTCGTGCGCTGCCTGGGCTAAGAAT 320 695 687 Antisense
GATTCTGCACGAACTTGTCTTACAC 164 433 713 Antisense
Sequence Source Affymetrix Proprietary Database