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[185176_at]

Description H19M22.4 /REP_DB=WormBase Gene ID /WP=CE17150 /TR=O44837 /GB=AAK21411.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 64      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 59.6
(0.7)
A 		9.1
(-3)
A 		18.7
(-2.3)
A 		91.7
(3)
A 		83
B 102.8
(3)
A 		26
(-1.7)
A 		4.3
(-3)
A 		52.2
(-0.1)
A 		99
C 40.4
(-1.4)
A 		20.4
(-2.7)
A 		16
(-3)
A 		108.4
(3)
A 		92
avr 67.6
(1.6) 		18.5
(-2.5) 		13
(-3) 		84.1
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 18.8
(-1.4)
A 		4
(-3)
A 		43.5
(1.2)
A 		11.8
(-2.2)
A 		17.1
(-1.6)
A 		61.1
(3)
A 		57
B 41.1
(0.1)
A 		22.5
(-2.7)
A 		32.6
(-1.2)
A 		61
(3)
A 		21.5
(-2.8)
A 		20.3
(-3)
A 		41
C 8.7
(-3)
A 		45.6
(3)
A 		41.6
(2.3)
A 		45.2
(2.9)
A 		14.1
(-2.1)
A 		24.1
(-0.5)
A 		37
avr 22.9
(-1.5) 		24
(-1.2) 		39.2
(3) 		39.3
(3) 		17.6
(-3) 		35.2
(1.9) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 21.7
(3)
A 		2
(-3)
A 		4.9
(-2.1)
A 		13.4
(0.5)
A 		20
B 32.8
(3)
A 		6.4
(-2)
A 		1
(-3)
A 		11.1
(-1.1)
A 		32
C 13.4
(0.7)
A 		5.9
(-2.9)
A 		5.6
(-3)
A 		18.3
(3)
A 		13
avr 22.6
(3) 		4.8
(-2.7) 		3.8
(-3) 		14.3
(0.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.5
(-2.1)
A 		1.4
(-3)
A 		9.5
(0.6)
A 		3
(-2.3)
A 		5.2
(-1.3)
A 		14.9
(3)
A 		14
B 14.3
(1.7)
A 		7.5
(-3)
A 		7.9
(-2.7)
A 		16.2
(3)
A 		8.7
(-2.2)
A 		7.6
(-2.9)
A 		9
C 3.2
(-3)
A 		13.9
(3)
A 		10.6
(1.1)
A 		9.1
(0.3)
A 		4.6
(-2.2)
A 		8.1
(-0.3)
A 		11
avr 7
(-1.8) 		7.6
(-0.9) 		9.3
(1.7) 		9.4
(1.8) 		6.2
(-3) 		10.2
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185176_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7451
Sequence Type Exemplar sequence
Representative Public ID H19M22.4 NCBI
Target Description H19M22.4 /REP_DB=WormBase Gene ID /WP=CE17150 /TR=O44837 /GB=AAK21411.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) H19M22.4
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H19M22.4 H19M22.4 /REP_DB=WormBase Gene ID /WP=CE17150 /TR=O44837 /GB=AAK21411.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2650841-2651554(-) 26.77 100.0
Sequence
Target Sequence 
>C. ELEGANS:185176_AT
gagaagggcgtggtgcccgttttctcgtctctcgcccaagaagtacctgtacgtgaagaa
gacggtatggaagaagaagaagaagaaaagggagaggttccgcacacttcaaaaactagt
ttaatcattgtttctccaggatggaatgccgagctctgttgtggaagcttgagtccagag
atgggagatacttgccgttcggcaaattcggcaaattgctggtttaccgatttgccggat
atcaacttgccggaagtttttgaagggatgtttcataaaacgagaagacttgaaacgata
gattataggaaaaaaattgacgctttgccggaaatttcaattccggtaatctgccggttg
gccggaaattttcatttttggaaaattgccggtttgccaatttgccgaaatttttcattt
ttgagaaattgcgggtttgccgaaattgccgaaaatttgaaaaacgacgactttgccgtt
tgccaaaaatgtttaattctgacaagtgccgaatttgccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGGGCGTGGTGCCCGTTTTCT 613 379 16 Antisense
TCTCGCCCAAGAAGTACCTGTACGT 669 609 45 Antisense
GAGGTTCCGCACACTTCAAAAACTA 17 389 109 Antisense
CTAGTTTAATCATTGTTTCTCCAGG 566 225 131 Antisense
GGAATGCCGAGCTCTGTTGTGGAAG 226 533 158 Antisense
GAGATGGGAGATACTTGCCGTTCGG 651 395 193 Antisense
CGATTTGCCGGATATCAACTTGCCG 37 249 243 Antisense
TTCCGGTAATCTGCCGGTTGGCCGG 158 655 356 Antisense
GAAATTGCGGGTTTGCCGAAATTGC 249 361 440 Antisense
ACGACTTTGCCGTTTGCCAAAAATG 81 91 482 Antisense
TCTGACAAGTGCCGAATTTGCCGAT 563 607 513 Antisense
Sequence Source Affymetrix Proprietary Database