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[185175_at]

Description Y53F4B.17 /REP_DB=WormBase Gene ID /WP=CE25397 /TR=Q9NAA2 /GB=CAB70107.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 20.2
(-2.9)
A 		29
(-2.2)
A 		18.7
(-3)
A 		96.7
(3)
A 		78
B 42
(3)
A 		26.2
(-3)
A 		32.6
(-0.6)
A 		33.5
(-0.2)
A 		16
C 20.3
(-1.7)
A 		6
(-3)
A 		19.1
(-1.8)
A 		69.9
(3)
A 		64
avr 27.5
(-2.1) 		20.4
(-3) 		23.5
(-2.6) 		66.7
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 13.9
(-1.5)
A 		36.4
(3)
A 		15.5
(-1.1)
A 		30.2
(1.8)
A 		6.1
(-3)
A 		11.1
(-2)
A 		30
B 22.9
(-3)
A 		32
(-1.2)
A 		53.9
(3)
A 		33
(-1)
A 		29.3
(-1.8)
A 		26.5
(-2.3)
A 		31
C 24.2
(-2.2)
A 		17.1
(-3)
A 		39.5
(-0.4)
A 		69.8
(3)
A 		32.3
(-1.3)
A 		18.5
(-2.8)
A 		53
avr 20.3
(-2.6) 		28.5
(-0.7) 		36.3
(1.1) 		44.3
(3) 		22.6
(-2.1) 		18.7
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 7.4
(-1.4)
A 		6.3
(-2.1)
A 		4.9
(-3)
A 		14.1
(3)
A 		9
B 13.4
(3)
A 		6.5
(-3)
A 		7.5
(-2.1)
A 		7.1
(-2.5)
A 		7
C 6.7
(-0)
A 		1.7
(-3)
A 		6.7
(-0)
A 		11.8
(3)
A 		10
avr 9.2
(1.3) 		4.8
(-3) 		6.4
(-1.5) 		11
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2.6
(-2.6)
A 		12.9
(3)
A 		3.4
(-2.1)
A 		7.7
(0.2)
A 		1.8
(-3)
A 		2.7
(-2.5)
A 		11
B 8
(-3)
A 		10.7
(0.2)
A 		13.1
(3)
A 		8.7
(-2.2)
A 		11.9
(1.6)
A 		9.9
(-0.8)
A 		5
C 9
(-0.4)
A 		5.2
(-3)
A 		10.1
(0.3)
A 		14
(3)
A 		10.4
(0.5)
A 		6.2
(-2.3)
A 		9
avr 6.5
(-2.7) 		9.6
(2.2) 		8.9
(1.1) 		10.1
(3) 		8
(-0.3) 		6.3
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185175_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3703
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.17 NCBI
Target Description Y53F4B.17 /REP_DB=WormBase Gene ID /WP=CE25397 /TR=Q9NAA2 /GB=CAB70107.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064701 NCBI Caenorhabditis elegans Y53F4B.17 (Y53F4B.17) mRNA, complete cds. 11/11 A 
SNAP00000043052 ENSEMBL cdna:SNAP chromosome:CEL140:II:15053736:15061638:1 11/11 None
GENEFINDER00000043145 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15058117:15062854:1 11/11 None
Y53F4B.17 ENSEMBL cdna:known chromosome:CEL140:II:15058117:15061947:1 gene:Y53F4B.17 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15058113-15061195(+) 81.72 91.5
Public Domain and Genome References
Gene Title
Ensembl Y53F4B.17
Entrez Gene 190216 Entrez gene
SwissProt Q9NAA2 EMBL-EBI
WormBase CE25397 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB70107 Hypothetical protein Y53F4B.17 [Caenorhabditis elegans] ref|NP_497102.1| Y53F4B.17 [Caenorhabditis elegans] 1.0E-124
blast CAB70107 Hypothetical protein Y53F4B.17 [Caenorhabditis elegans] ref|NP_497102.1| Y53F4B.17 [Caenorhabditis elegans] 1.0E-123
blast CAB70107 Hypothetical protein Y53F4B.17 [Caenorhabditis elegans] ref|NP_497102.1| Y53F4B.17 [Caenorhabditis elegans] 1.0E-109
blast CAB61086 Hypothetical protein Y53F4B.16 [Caenorhabditis elegans] ref|NP_497101.1| Y53F4B.16 [Caenorhabditis elegans] 3.0E-57
blast CAB61086 Hypothetical protein Y53F4B.16 [Caenorhabditis elegans] ref|NP_497101.1| Y53F4B.16 [Caenorhabditis elegans] 4.0E-57
blast CAB61086 Hypothetical protein Y53F4B.16 [Caenorhabditis elegans] ref|NP_497101.1| Y53F4B.16 [Caenorhabditis elegans] 1.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043145 1 374-396
Sequence
Target Sequence 
>C. ELEGANS:185175_AT
ctggccttgaaccgagatcggcagatgttcgaggagaggatgaagatgtgcaggaagttg
gtcatggagagcagcgagttcgggaggtggatccgcgagctgatcgtgaagttgaaagcg
atccgttctctgaagccaccaccttcagaagcgatcaggtccaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGCCTTGAACCGAGATCGGCAGA 543 241 407 Antisense
GATCGGCAGATGTTCGAGGAGAGGA 569 417 422 Antisense
GTGCAGGAAGTTGGTCATGGAGAGC 1 481 454 Antisense
GTCATGGAGAGCAGCGAGTTCGGGA 306 455 467 Antisense
GAGTTCGGGAGGTGGATCCGCGAGC 533 139 482 Antisense
GGATCCGCGAGCTGATCGTGAAGTT 191 513 495 Antisense
GAAGTTGAAAGCGATCCGTTCTCTG 245 337 514 Antisense
TTGAAAGCGATCCGTTCTCTGAAGC 431 705 518 Antisense
TTCTCTGAAGCCACCACCTTCAGAA 595 691 532 Antisense
GCCACCACCTTCAGAAGCGATCAGG 467 279 541 Antisense
CCTTCAGAAGCGATCAGGTCCACCC 598 267 548 Antisense
Sequence Source Affymetrix Proprietary Database