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[185174_at]

Description F40H7.10 /REP_DB=WormBase Gene ID /WP=CE10214 /TR=O17095 /GB=AAF39809.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 37      6grp_cgc > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 10
(-3)
A 		55.8
(3)
A 		35.8
(0.4)
A 		14
(-2.5)
A 		46
B 20.9
(3)
A 		13.1
(-1)
A 		18.1
(1.6)
A 		9.3
(-3)
A 		12
C 61.5
(3)
A 		15.6
(-2.1)
A 		7.6
(-3)
A 		55.5
(2.3)
A 		54
avr 30.8
(3) 		28.2
(1.5) 		20.5
(-3) 		26.3
(0.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 14.8
(-2.1)
A 		12.6
(-2.3)
A 		61.1
(3)
A 		6.7
(-3)
A 		7.5
(-2.9)
A 		6.4
(-3)
A 		55
B 47.9
(3)
A 		4.1
(-3)
A 		12.1
(-1.9)
A 		14.4
(-1.6)
A 		9.8
(-2.2)
A 		5.2
(-2.8)
A 		44
C 44
(3)
A 		9.5
(-2.3)
A 		6.6
(-2.7)
A 		15.2
(-1.4)
A 		14.6
(-1.5)
A 		4.7
(-3)
A 		39
avr 35.6
(3) 		8.7
(-2.3) 		26.6
(1.2) 		12.1
(-1.7) 		10.6
(-2) 		5.4
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.7
(-2)
A 		12.1
(3)
A 		9.4
(1.4)
A 		2.1
(-3)
A 		10
B 6.7
(3)
A 		3.2
(-1.5)
A 		4.2
(-0.2)
A 		2
(-3)
A 		5
C 20.3
(3)
A 		4.5
(-2.4)
A 		2.7
(-3)
A 		9.4
(-0.7)
A 		18
avr 10.2
(3) 		6.6
(-0.8) 		5.4
(-2.1) 		4.5
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 2.7
(-2.4)
A 		4.5
(-1.5)
A 		13.3
(3)
A 		1.7
(-2.9)
A 		2.3
(-2.6)
A 		1.6
(-3)
A 		12
B 16.7
(3)
A 		1.3
(-3)
A 		2.9
(-2.4)
A 		3.8
(-2)
A 		4
(-1.9)
A 		1.9
(-2.8)
A 		15
C 16.3
(3)
A 		2.9
(-2.5)
A 		1.7
(-3)
A 		3.1
(-2.4)
A 		4.7
(-1.7)
A 		1.6
(-3)
A 		15
avr 11.9
(3) 		2.9
(-2.3) 		6
(-0.5) 		2.9
(-2.3) 		3.7
(-1.8) 		1.7
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185174_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5128
Sequence Type Exemplar sequence
Representative Public ID F40H7.10 NCBI
Target Description F40H7.10 /REP_DB=WormBase Gene ID /WP=CE10214 /TR=O17095 /GB=AAF39809.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000031709 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3703715:3705418:-1 11/11 None
F40H7.10 ENSEMBL cdna:pseudogene chromosome:CEL140:II:3703715:3704939:-1 gene:F40H7.10 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3703713-3705417(-) 100.0 100.0
Public Domain and Genome References
Ensembl F40H7.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T32282 hypothetical protein F40H7.10 - Caenorhabditis elegans 0.0
blast AAF39802 Serpentine receptor, class x protein 108 [Caenorhabditis elegans] ref|NP_494622.1| Serpentine Receptor, class X family member (srx-108) [Caenorhabditis elegans] 1.0E-69
blast AAF39806 Serpentine receptor, class x protein 104 [Caenorhabditis elegans] ref|NP_494618.2| Serpentine Receptor, class X family member (srx-104) [Caenorhabditis elegans] 4.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000031709 4 157-179,202-224,279-301,316-338
Sequence
Target Sequence 
>C. ELEGANS:185174_AT
ttctagtggtatgcttcttcccaaccaatgtccctagaaacagtaccaagattactgtag
ctgctctgttactctcctggatctttacagcctggttttcaactttaattggcatgccaa
aaaagtgcctagttccatttagtttcgagcacgtcagcatgcatagtacggcttgtaata
atcaacttacagttattatgatttccgctgttttttgcatagcggtgtgcaccaatttaa
tgaattcctggattgcaatcaagttgatttgtttttccgtaagtttgaatttgcgcgcta
atgccgaccaatcaggaacagaggatgtgaccaacgtcgctgattggtcagtttcagaaa
tcatcgaatatgatatgatatccacgtcaacagcaaatagccgccgcaaaagtcgaatat
acttctttatccagtcatgtttccaagattggatacatttgatagttatcgcaaataatt
ttctatcattctattattgttctgattttgtttgcaccaccttggcatcaatggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTAGTGGTATGCTTCTTCCCAAC 8 691 374 Antisense
TTCCCAACCAATGTCCCTAGAAACA 111 211 391 Antisense
TTACTGTAGCTGCTCTGTTACTCTC 609 681 425 Antisense
GTTACTCTCCTGGATCTTTACAGCC 85 447 441 Antisense
AGTTCCATTTAGTTTCGAGCACGTC 54 65 504 Antisense
GCACGTCAGCATGCATAGTACGGCT 597 313 522 Antisense
ATGATTTCCGCTGTTTTTTGCATAG 3 47 571 Antisense
TTTGAATTTGCGCGCTAATGCCGAC 396 665 657 Antisense
GAGGATGTGACCAACGTCGCTGATT 33 405 694 Antisense
ACTTCTTTATCCAGTCATGTTTCCA 557 103 794 Antisense
TTTGCACCACCTTGGCATCAATGGG 183 659 884 Antisense
Sequence Source Affymetrix Proprietary Database