[Home] | [Total List]

[185173_at]

Description F41E6.12 /REP_DB=WormBase Gene ID /WP=CE10266 /TR=O16465 /GB=AAB65960.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      6grp_highest_nonorm > 53      6grp_total > 71      4grp_total > 59      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 668
1 2 3 4 range
A 411.6
(0.3)
P 		676.9
(2.7)
P 		713
(3)
P 		45.1
(-3)
A 		668
B 411.8
(0.4)
P 		684.2
(3)
P 		678.3
(2.9)
P 		52.1
(-3)
A 		632
C 380.3
(-0.2)
P 		705.7
(3)
P 		686.3
(2.8)
P 		89.2
(-3)
A 		617
avr 401.2
(0.2) 		688.9
(3) 		692.5
(3) 		62.1
(-3) 		630

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 971
1 2 3 4 5 6 range
A 586.2
(-0.5)
P 		501.8
(-1)
P 		952.9
(2)
P 		1093.6
(3)
P 		780.5
(0.9)
P 		212
(-3)
P 		882
B 583.7
(-1)
P 		705.3
(-0.2)
P 		979.2
(1.7)
P 		1182.6
(3)
P 		775.5
(0.3)
P 		273.5
(-3)
P 		909
C 536.8
(-1.1)
P 		706
(0.1)
P 		787
(0.6)
P 		1133.6
(3)
P 		853.5
(1.1)
P 		261.9
(-3)
P 		872
avr 568.9
(-0.8) 		637.7
(-0.4) 		906.4
(1.4) 		1136.6
(3) 		803.2
(0.7) 		249.1
(-3) 		888
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 233
1 2 3 4 range
A 149.9
(1.8)
P 		146.9
(1.7)
P 		186.4
(3)
P 		6.6
(-3)
A 		180
B 131.3
(1.6)
P 		169
(3)
P 		157.2
(2.6)
P 		11.1
(-3)
A 		158
C 125.9
(-0)
P 		202.9
(2)
P 		239.2
(3)
P 		15
(-3)
A 		224
avr 135.7
(1.1) 		172.9
(2.3) 		194.3
(3) 		10.9
(-3) 		183

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 264
1 2 3 4 5 6 range
A 108.1
(-1.5)
P 		178.5
(0.4)
P 		207.5
(1.1)
P 		277.4
(3)
P 		235.5
(1.9)
P 		51.6
(-3)
P 		226
B 203.1
(-0.2)
P 		234.8
(0.7)
P 		237.8
(0.8)
P 		313.2
(2.9)
P 		315.1
(3)
P 		102
(-3)
P 		213
C 199
(0.5)
P 		215.4
(1.1)
P 		200.3
(0.6)
P 		228
(1.5)
P 		276.2
(3)
P 		87.7
(-3)
P 		189
avr 170.1
(-0.2) 		209.6
(1) 		215.2
(1.1) 		272.9
(2.9) 		275.6
(3) 		80.4
(-3) 		195
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185173_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12261
Sequence Type Exemplar sequence
Representative Public ID F41E6.12 NCBI
Target Description F41E6.12 /REP_DB=WormBase Gene ID /WP=CE10266 /TR=O16465 /GB=AAB65960.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072825(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072825 NCBI Caenorhabditis elegans F41E6.12 (F41E6.12) mRNA, complete cds. 11/11 None
SNAP00000009431 ENSEMBL cdna:SNAP chromosome:CEL140:V:8629572:8631656:-1 11/11 None
GENEFINDER00000009440 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8627800:8631656:-1 11/11 None
F41E6.12 ENSEMBL cdna:known chromosome:CEL140:V:8629572:8631656:-1 gene:F41E6.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8629572-8631753(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41E6.12
Entrez Gene 185621 Entrez gene
SwissProt O16465 EMBL-EBI
WormBase CE37770 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65960 Hypothetical protein F41E6.12 [Caenorhabditis elegans] ref|NP_505226.2| F41E6.12 [Caenorhabditis elegans] 1.0E-158
blast AAB65960 Hypothetical protein F41E6.12 [Caenorhabditis elegans] ref|NP_505226.2| F41E6.12 [Caenorhabditis elegans] 1.0E-153
blast CAE58349 Hypothetical protein CBG01470 [Caenorhabditis briggsae] 1.0E-108
blast CAE58349 Hypothetical protein CBG01470 [Caenorhabditis briggsae] 1.0E-104
Sequence
Target Sequence 
>C. ELEGANS:185173_AT
ctcggcagcctggtgaaacttccaaaaccagagagatccagtactgataaagtagtagat
caagtaatcgagcatagtggtccggcttcttcgtcagaggaaacgaagaattcaacagtt
ccagaagtaaaaattgaggatgaaaagggtgtgttagtgtttgtcagtgagtactgtgtc
attgaaagagaacgatttgtgaaaggatgtcatggagatattgataagaaagaggaaaca
ttctgcaagacgtacgtctcagcatgtgcttctacaacaggtgttctccctgttatgaca
tattgtgctcgctactacacatattatccaacacactgtaaagctcaacttgtcgatcca
aaagccttgcaattctgtttcgcatttgagcagttttgtttgcctgagaaaactgctgca
cagtcaccaaagaatccaaaatcatctctccgaaaatgcgaagatgttctgccagaagct
cgaaaagtgtgtaatccattcccaaatccaaaagacactttcaacttgcttcgatgcact
catttcttgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCGGCAGCCTGGTGAAACTTCCAA 672 229 442 Antisense
AATCGAGCATAGTGGTCCGGCTTCT 277 167 507 Antisense
GTCCGGCTTCTTCGTCAGAGGAAAC 249 475 521 Antisense
AAGACGTACGTCTCAGCATGTGCTT 685 153 688 Antisense
AGGTGTTCTCCCTGTTATGACATAT 618 57 720 Antisense
ATGACATATTGTGCTCGCTACTACA 419 45 736 Antisense
AAGCCTTGCAATTCTGTTTCGCATT 469 149 803 Antisense
GAATCCAAAATCATCTCTCCGAAAA 106 331 873 Antisense
AAGTGTGTAATCCATTCCCAAATCC 56 159 926 Antisense
GACACTTTCAACTTGCTTCGATGCA 221 367 955 Antisense
GCTTCGATGCACTCATTTCTTGACA 37 307 969 Antisense
Sequence Source Affymetrix Proprietary Database