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[185171_at]

Description F19B10.4 /REP_DB=WormBase Gene ID /WP=CE09471 /TR=O02068 /GB=AAB52924.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 17      4grp_total > 19      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 8.4
(-2.2)
A 		8.3
(-2.3)
A 		3.1
(-3)
A 		45.2
(3)
A 		42
B 5.9
(-2.5)
A 		40.9
(2.7)
A 		2.8
(-3)
A 		43
(3)
A 		40
C 12.2
(-2.2)
A 		5.2
(-2.8)
A 		2.2
(-3)
A 		76.5
(3)
A 		74
avr 8.8
(-2.3) 		18.1
(-1.2) 		2.7
(-3) 		54.9
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 129.5
(3)
A 		75.4
(0.2)
A 		32.1
(-2)
A 		13.2
(-3)
A 		25.5
(-2.3)
A 		12.6
(-3)
A 		117
B 153.4
(3)
M 		48.6
(-1.2)
A 		42.4
(-1.4)
A 		2.9
(-3)
A 		3.5
(-2.9)
A 		1.9
(-3)
A 		152
C 284.5
(3)
A 		96.9
(-1)
A 		4.9
(-3)
A 		6.9
(-2.9)
A 		3.3
(-3)
A 		4.4
(-3)
A 		281
avr 189.1
(3) 		73.6
(-0.8) 		26.5
(-2.3) 		7.7
(-3) 		10.8
(-2.9) 		6.3
(-3) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 3.1
(-0.6)
A 		1.8
(-2)
A 		0.8
(-3)
A 		6.6
(3)
A 		6
B 1.9
(-2.2)
A 		10.1
(3)
A 		0.7
(-3)
A 		9.2
(2.4)
A 		9
C 4
(-1.4)
A 		1.5
(-2.7)
A 		0.8
(-3)
A 		12.9
(3)
A 		12
avr 3
(-1.5) 		4.5
(-0.5) 		0.8
(-3) 		9.6
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 23.9
(2.3)
A 		26.8
(3)
A 		7
(-2)
A 		3.3
(-2.9)
A 		7.7
(-1.8)
A 		3.1
(-3)
A 		24
B 53.4
(3)
M 		16.2
(-1.2)
A 		10.3
(-1.9)
A 		0.8
(-3)
A 		1.4
(-2.9)
A 		0.7
(-3)
A 		53
C 105.5
(3)
A 		29.6
(-1.4)
A 		1.2
(-3)
A 		1.4
(-3)
A 		1.1
(-3)
A 		1.5
(-3)
A 		104
avr 60.9
(3) 		24.2
(-0.7) 		6.2
(-2.6) 		1.8
(-3) 		3.4
(-2.8) 		1.8
(-3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185171_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5828
Sequence Type Exemplar sequence
Representative Public ID F19B10.4 NCBI
Target Description F19B10.4 /REP_DB=WormBase Gene ID /WP=CE09471 /TR=O02068 /GB=AAB52924.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062205(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062205 NCBI Caenorhabditis elegans F19B10.4 (F19B10.4) mRNA, complete cds. 11/11 None
F19B10.4 ENSEMBL cdna:known chromosome:CEL140:II:3660078:3662612:1 gene:F19B10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017111 3/11 Cross Hyb Matching Probes None
SNAP00000017112 7/11 Cross Hyb Matching Probes None
GENEFINDER00000017128 4/11 Cross Hyb Matching Probes None
GENEFINDER00000017130 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3660076-3662611(+) 98.49 100.0
Public Domain and Genome References
Gene Title
Ensembl F19B10.4
Entrez Gene 184669 Entrez gene
SwissProt O02068 EMBL-EBI
WormBase CE09471 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52924 Hypothetical protein F19B10.4 [Caenorhabditis elegans] ref|NP_494606.1| F19B10.4 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185171_AT
gatggacgaacaacggcaaacacttgaacaggacaatgcaagaaaccagagcgaatatga
tatgaagatgagggagatgcgtgaagaattgcagaatctggagcggaagctggaagctcg
tccaccttgctgctgctcaagccagaaacaatcagaggaatcagaaagaaatgtactttc
aaaaagggaaaaacttctcagtctcgagccaaaaaaatcgttcaatttgtataaattaat
tataatttttcatttgtattctgaagacgagttcaaatcctctgaaccatctgaatatat
tcctgcttccttaaccgattctggatgttgctcaatggatactgctgagaaggttcacga
tgaggagtactccgagctatcagatttcgatgaagactttgattttgacaaagatctagc
tgaactttccaacgagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGACGAACAACGGCAAACACTT 278 407 840 Antisense
GAGCGGAAGCTGGAAGCTCGTCCAC 210 387 940 Antisense
GCTGCTGCTCAAGCCAGAAACAATC 373 297 968 Antisense
GAAAAACTTCTCAGTCTCGAGCCAA 238 355 1027 Antisense
CAAATCCTCTGAACCATCTGAATAT 593 193 1113 Antisense
ACCATCTGAATATATTCCTGCTTCC 666 85 1125 Antisense
CTGCTTCCTTAACCGATTCTGGATG 329 237 1142 Antisense
GGATGTTGCTCAATGGATACTGCTG 215 515 1162 Antisense
GATACTGCTGAGAAGGTTCACGATG 587 423 1177 Antisense
GATGAGGAGTACTCCGAGCTATCAG 387 409 1198 Antisense
GATCTAGCTGAACTTTCCAACGAGG 7 419 1252 Antisense
Sequence Source Affymetrix Proprietary Database