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[185170_at] 7TM receptor, sre family

Description Y39C12A.3 /REP_DB=WormBase Gene ID /WP=CE21704 /TR=Q9U2L8 /GB=CAB60488.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 05      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 31.8
(-1.4)
A 		32.7
(-1.3)
A 		18.2
(-3)
A 		69.3
(3)
A 		51
B 34.2
(0.9)
A 		19.6
(-3)
A 		42.2
(3)
A 		29.7
(-0.3)
A 		23
C 26.8
(-0.6)
A 		4.8
(-3)
A 		24.2
(-0.8)
A 		58.7
(3)
M 		54
avr 30.9
(-0.9) 		19
(-3) 		28.2
(-1.4) 		52.6
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 87
(1.2)
P 		25.5
(-3)
A 		112.7
(3)
P 		44.7
(-1.6)
A 		43.7
(-1.7)
A 		24.8
(-3)
A 		88
B 47.5
(1)
P 		45
(0.8)
P 		47.5
(1)
P 		70.7
(3)
P 		44
(0.7)
A 		1.3
(-3)
A 		69
C 48.1
(-0.2)
P 		101.6
(3)
P 		63.8
(0.7)
A 		92.6
(2.5)
P 		2.5
(-3)
A 		29.2
(-1.4)
A 		99
avr 60.9
(1.5) 		57.4
(1.2) 		74.7
(3) 		69.3
(2.4) 		30.1
(-1.8) 		18.4
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 11.6
(3)
A 		7.1
(-1)
A 		4.8
(-3)
A 		10.1
(1.7)
A 		7
B 10.9
(3)
A 		4.8
(-3)
A 		9.8
(1.9)
A 		6.3
(-1.5)
A 		6
C 8.9
(2.3)
A 		1.4
(-3)
A 		8.4
(1.9)
A 		9.9
(3)
M 		9
avr 10.5
(3) 		4.4
(-3) 		7.7
(0.2) 		8.8
(1.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 16
(0.2)
P 		9.1
(-2)
A 		24.5
(3)
P 		11.3
(-1.3)
A 		13.2
(-0.7)
A 		6
(-3)
A 		19
B 16.5
(2.3)
P 		15
(1.8)
P 		11.5
(0.6)
P 		18.7
(3)
P 		17.9
(2.7)
A 		0.5
(-3)
A 		18
C 17.8
(0.4)
P 		31
(3)
P 		16.2
(0.1)
A 		18.6
(0.5)
P 		0.8
(-3)
A 		9.8
(-1.2)
A 		30
avr 16.8
(2.3) 		18.4
(3) 		17.4
(2.5) 		16.2
(2) 		10.6
(-0.6) 		5.4
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185170_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9032
Sequence Type Exemplar sequence
Representative Public ID Y39C12A.3 NCBI
Target Description Y39C12A.3 /REP_DB=WormBase Gene ID /WP=CE21704 /TR=Q9U2L8 /GB=CAB60488.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069920(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069920 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-18) (sre-18) mRNA, complete cds. 11/11 None
GENEFINDER00000019628 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12227883:12229750:-1 11/11 None
Y39C12A.3 ENSEMBL cdna:known chromosome:CEL140:IV:12227883:12229750:-1 gene:Y39C12A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12227888-12229756(-) 97.05 100.0
Public Domain and Genome References
Gene Title 7TM receptor, sre family
Gene Symbol sre-18
Ensembl Y39C12A.3
Entrez Gene 189745 Entrez gene
SwissProt Q9U2L8 EMBL-EBI
WormBase CE21704 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60488 Hypothetical protein Y39C12A.3 [Caenorhabditis elegans] ref|NP_502321.1| Serpentine Receptor, class E (epsilon) family member (sre-18) [Caenorhabditis elegans] 1.0E-159
blast CAB60491 Hypothetical protein Y39C12A.6 [Caenorhabditis elegans] ref|NP_502324.1| Serpentine Receptor, class E (epsilon) family member (sre-19) [Caenorhabditis elegans] 4.0E-72
blast CAE62208 Hypothetical protein CBG06258 [Caenorhabditis briggsae] 3.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.3E-42
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502321.1 7 15-37,58-80,95-117,130-152,157-179,211-233,248-267
Y39C12A.3 7 15-37,58-80,95-117,130-152,157-179,211-233,248-267
GENEFINDER00000019628 7 15-37,58-80,95-117,130-152,157-179,211-233,248-267
Sequence
Target Sequence 
>C. ELEGANS:185170_AT
gttggagcgtctttgcgcaacatattatgtgaaggattatgagaaaaatcagcggccaat
cattccatttttgataataatttttctaataatactatcctttatagcatcaactgtctt
tacttctgttggtatggtgttatattttggtgtctgtcatttctcatttatttttgtatg
ctacattgtctcagtaataacgtatcgaacaaatcgaaggtattactataataatcgtgt
agaccaacattcatattcattgggagaacgatatcaaatttctgaaaatcttcggcttta
catgtttttctcgcactaccttttcgtaatggctgttttccccatcatttgtaccttaac
cattgtcctcgactctttcaattcaaattttttgttacgagaaatttatcaaattatttt
tgatttaagtttcacattattatgcttccttgctccttacctgacatacaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGAGCGTCTTTGCGCAACATAT 620 435 345 Antisense
AAATCAGCGGCCAATCATTCCATTT 189 117 390 Antisense
TAGCATCAACTGTCTTTACTTCTGT 287 651 449 Antisense
TTTGGTGTCTGTCATTTCTCATTTA 316 667 490 Antisense
TCGGCTTTACATGTTTTTCTCGCAC 277 607 636 Antisense
TCGCACTACCTTTTCGTAATGGCTG 126 601 655 Antisense
TTCGTAATGGCTGTTTTCCCCATCA 385 691 667 Antisense
CATTTGTACCTTAACCATTGTCCTC 427 215 690 Antisense
TTGTCCTCGACTCTTTCAATTCAAA 564 707 707 Antisense
TCACATTATTATGCTTCCTTGCTCC 9 629 776 Antisense
CTTGCTCCTTACCTGACATACAAAA 348 219 793 Antisense
Sequence Source Affymetrix Proprietary Database