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[185169_at]

Description Y75B8A.33 /REP_DB=WormBase Gene ID /WP=CE23044 /TR=Q9XW60 /GB=CAA22111.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 5.5
(-0.8)
A 		6.9
(1)
A 		3.8
(-3)
A 		8.4
(3)
A 		5
B 7.2
(-2.9)
A 		6.7
(-3)
A 		6.6
(-3)
A 		78.4
(3)
A 		72
C 8.9
(1.5)
A 		5.5
(-2.1)
A 		4.6
(-3)
A 		10.3
(3)
A 		6
avr 7.2
(-2.5) 		6.4
(-2.7) 		5
(-3) 		32.4
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 13.3
(-0.5)
A 		8.3
(-1.7)
A 		9.2
(-1.5)
A 		20.7
(1.4)
A 		27.2
(3)
A 		3.1
(-3)
A 		24
B 22.1
(3)
A 		11.8
(-0.8)
A 		7
(-2.6)
A 		6
(-3)
A 		6.6
(-2.8)
A 		10.4
(-1.4)
A 		16
C 7.2
(0.3)
A 		8.6
(1.7)
A 		8.6
(1.7)
A 		9.9
(3)
A 		7.4
(0.5)
A 		4
(-3)
A 		6
avr 14.2
(3) 		9.6
(-0.3) 		8.3
(-1.2) 		12.2
(1.6) 		13.7
(2.6) 		5.8
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2
(3)
A 		1.5
(0)
A 		1
(-3)
A 		1.2
(-1.8)
A 		1
B 2.3
(-2.7)
A 		1.7
(-2.9)
A 		1.5
(-3)
A 		16.7
(3)
A 		15
C 2.9
(3)
A 		1.6
(-3)
A 		1.6
(-3)
A 		1.7
(-2.5)
A 		1
avr 2.4
(-1.8) 		1.6
(-2.8) 		1.4
(-3) 		6.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.5
(-1.6)
A 		3
(-1.2)
A 		2
(-2)
A 		5.3
(0.7)
A 		8.2
(3)
A 		0.7
(-3)
A 		8
B 7.7
(3)
A 		3.9
(-0.7)
A 		1.7
(-2.9)
A 		1.6
(-3)
A 		2.7
(-1.9)
A 		3.9
(-0.7)
A 		6
C 2.7
(3)
A 		2.6
(2.6)
A 		2.2
(0.9)
A 		2
(-0)
A 		2.4
(1.7)
A 		1.3
(-3)
A 		1
avr 4.3
(2.8) 		3.2
(0) 		2
(-3) 		3
(-0.5) 		4.4
(3) 		2
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185169_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6094
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.33 NCBI
Target Description Y75B8A.33 /REP_DB=WormBase Gene ID /WP=CE23044 /TR=Q9XW60 /GB=CAA22111.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067206(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067206 NCBI Caenorhabditis elegans Y75B8A.33 (Y75B8A.33) mRNA, complete cds. 11/11 None
SNAP00000020102 ENSEMBL cdna:SNAP chromosome:CEL140:III:12361734:12367248:-1 11/11 None
GENEFINDER00000020185 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12363179:12365018:-1 11/11 None
Y75B8A.33 ENSEMBL cdna:known chromosome:CEL140:III:12364156:12364887:-1 gene:Y75B8A.33 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12364151-12364883(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B8A.33
Entrez Gene 190713 Entrez gene
SwissProt Q9XW60 EMBL-EBI
WormBase CE23044 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22111 Hypothetical protein Y75B8A.33 [Caenorhabditis elegans] ref|NP_499607.1| Y75B8A.33 [Caenorhabditis elegans] 3.0E-72
blast CAA22111 Hypothetical protein Y75B8A.33 [Caenorhabditis elegans] ref|NP_499607.1| Y75B8A.33 [Caenorhabditis elegans] 2.0E-68
blast CAE66489 Hypothetical protein CBG11769 [Caenorhabditis briggsae] 5.0E-43
blast CAE66489 Hypothetical protein CBG11769 [Caenorhabditis briggsae] 4.0E-42
blast CAE66489 Hypothetical protein CBG11769 [Caenorhabditis briggsae] 4.0E-41
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499607.1 1 56-78
Y75B8A.33 1 56-78
SNAP00000020102 4 15-34,117-139,206-228,267-289
GENEFINDER00000020185 2 11-33,100-122
Sequence
Target Sequence 
>C. ELEGANS:185169_AT
actgattttgttctagacttccgcaaacagaaatccgagcagaagaaggtggaaatcaaa
tcgatttcctccacccaatacgacatcaaatcctcgtggaaatccctatcccaacgagcc
atgaaagcctttcttccaatttctccagctcttctctacttctcactctatgccacatgc
cttttcctacttgcctgctatcacacttggatgcgtgatccgaatgaaattagtgagaat
atgagagcagtctcgaatttcgctgttggacttgattcgtcgattttgattggaaaacgt
gatgtgaacagttatgtgtttgtgatttggggagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGATTTTGTTCTAGACTTCCGCA 393 97 52 Antisense
GACTTCCGCAAACAGAAATCCGAGC 661 369 67 Antisense
GAAATCAAATCGATTTCCTCCACCC 236 363 103 Antisense
CTCCACCCAATACGACATCAAATCC 485 235 120 Antisense
CAAATCCTCGTGGAAATCCCTATCC 654 191 138 Antisense
CCTATCCCAACGAGCCATGAAAGCC 587 267 156 Antisense
CGAGCCATGAAAGCCTTTCTTCCAA 389 251 166 Antisense
TGCCTGCTATCACACTTGGATGCGT 444 583 243 Antisense
GAGAGCAGTCTCGAATTTCGCTGTT 631 393 294 Antisense
TTCGCTGTTGGACTTGATTCGTCGA 468 697 310 Antisense
GTTATGTGTTTGTGATTTGGGGAGT 389 445 362 Antisense
Sequence Source Affymetrix Proprietary Database