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[185168_s_at]

Description Y116A8A.4 /REP_DB=WormBase Gene ID /WP=CE23308 /TR=Q9U2W3 /GB=CAB55162.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 17.3
(3)
A 		4.4
(-1.8)
A 		1.2
(-3)
A 		3.9
(-2)
A 		16
B 12.5
(-1)
A 		29.2
(3)
A 		4.2
(-3)
A 		14.6
(-0.5)
A 		25
C 2.3
(-3)
A 		17.8
(0.2)
A 		10.1
(-1.4)
A 		31.7
(3)
A 		29
avr 10.7
(-0.2) 		17.1
(3) 		5.2
(-3) 		16.7
(2.8) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 34.9
(1)
A 		42
(3)
A 		32.8
(0.4)
A 		20.9
(-3)
A 		25.3
(-1.7)
A 		41.8
(2.9)
P 		21
B 16.4
(-1.3)
A 		2.5
(-3)
A 		23.6
(-0.4)
A 		6.2
(-2.5)
A 		51
(3)
M 		49.5
(2.8)
P 		49
C 3.5
(-3)
A 		19.8
(0.1)
A 		11.8
(-1.4)
A 		17.4
(-0.4)
A 		17.4
(-0.4)
A 		35.2
(3)
A 		32
avr 18.3
(-2.2) 		21.4
(-1.6) 		22.7
(-1.3) 		14.8
(-3) 		31.2
(0.6) 		42.2
(3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 6.3
(3)
A 		0.9
(-2.4)
A 		0.3
(-3)
A 		0.6
(-2.7)
A 		6
B 4
(-0.1)
A 		7.2
(3)
A 		1
(-3)
A 		3.1
(-1)
A 		6
C 0.8
(-3)
A 		5.1
(2.7)
A 		3.5
(0.6)
A 		5.3
(3)
A 		5
avr 3.7
(1.5) 		4.4
(3) 		1.6
(-3) 		3
(-0) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6.4
(-2.3)
A 		14.9
(3)
A 		7.2
(-1.8)
A 		5.3
(-3)
A 		7.6
(-1.6)
A 		10.2
(0.1)
P 		10
B 5.7
(-1.5)
A 		0.8
(-3)
A 		5.7
(-1.5)
A 		1.6
(-2.8)
A 		20.7
(3)
M 		18.5
(2.3)
P 		20
C 1.3
(-3)
A 		6
(-0.3)
A 		3
(-2)
A 		3.5
(-1.7)
A 		5.6
(-0.5)
A 		11.8
(3)
A 		11
avr 4.5
(-2.4) 		7.2
(-0.8) 		5.3
(-1.9) 		3.5
(-3) 		11.3
(1.7) 		13.5
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185168_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8703
Sequence Type Exemplar sequence
Representative Public ID Y116A8A.4 NCBI
Target Description Y116A8A.4 /REP_DB=WormBase Gene ID /WP=CE23308 /TR=Q9U2W3 /GB=CAB55162.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070592(11), NM_070593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070592 NCBI Caenorhabditis elegans Y116A8A.4 (Y116A8A.4) mRNA, complete cds. 11/11 A 
NM_070593 NCBI Caenorhabditis elegans Y116A8A.6 (Y116A8A.6) mRNA, complete cds. 11/11 A 
SNAP00000018648 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16822828:16824452:1 11/11 None
SNAP00000018649 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16826283:16827925:-1 11/11 None
GENEFINDER00000018658 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16825882:16827925:-1 11/11 None
GENEFINDER00000018660 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16822828:16824452:1 11/11 None
Y116A8A.4 ENSEMBL cdna:known chromosome:CEL140:IV:16822828:16824452:1 gene:Y116A8A.4 11/11 A 
Y116A8A.6 ENSEMBL cdna:known chromosome:CEL140:IV:16825882:16827925:-1 gene:Y116A8A.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16822833-16824458(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y116A8A.4
Y116A8A.6
Entrez Gene 190985 Entrez gene
190986 Entrez gene
SwissProt Q9U2W3 EMBL-EBI
Q9U2W2 EMBL-EBI
WormBase CE23308 Wormbase
CE23310 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55162 Hypothetical protein Y116A8A.4 [Caenorhabditis elegans] ref|NP_502993.1| Y116A8A.4 [Caenorhabditis elegans] 0.0
blast CAB55163 Hypothetical protein Y116A8A.6 [Caenorhabditis elegans] ref|NP_502994.1| Y116A8A.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 3.0E-71
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 2.1E-79
Sequence
Target Sequence 
>C. ELEGANS:185168_S_AT
tgtgaactcttctacgatctttcgaagcttcaaaaggaaatttgtgattattctggagta
tgtggatatgagaaaccaactcttacaacggagcccacgccagtcactactgaaaaatct
acagtttcaacaaccatttctacttcactcgaaacgactataatgcaggcttcgtcagct
tcgccaacttcgatcaagccatctacgacgacagaaccatcgcctttgcaagcttcaagc
aagccagctacagaaccattgcttcgacctgaatcgactagacgagcctcatcatcagct
tcaagcaagcctgaagtccagacaacaatcccaacagaaatccgaacttcttctttgcca
acgccgttcctgaaaacgtctacaacagtcactacgacaactcctgaacctgcaactgtt
gattatggagatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGAACTCTTCTACGATCTTTCGA 170 555 796 Antisense
TTCTACGATCTTTCGAAGCTTCAAA 633 689 805 Antisense
TTCAACAACCATTTCTACTTCACTC 283 685 921 Antisense
CACTCGAAACGACTATAATGCAGGC 707 195 941 Antisense
TATAATGCAGGCTTCGTCAGCTTCG 42 659 954 Antisense
CCATCGCCTTTGCAAGCTTCAAGCA 153 271 1012 Antisense
GCAAGCTTCAAGCAAGCCAGCTACA 289 319 1023 Antisense
AAGCCAGCTACAGAACCATTGCTTC 302 149 1036 Antisense
AGCAAGCCTGAAGTCCAGACAACAA 167 77 1099 Antisense
GTCCAGACAACAATCCCAACAGAAA 656 475 1111 Antisense
CTGCAACTGTTGATTATGGAGATGA 611 237 1205 Antisense
Sequence Source Affymetrix Proprietary Database