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[185167_at]

Description Y116A8A.4 /REP_DB=WormBase Gene ID /WP=CE23308 /TR=Q9U2W3 /GB=CAB55162.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 35      4grp_total > 33      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 49.3
(-3)
A 		74
(1.6)
A 		81.6
(3)
A 		73.2
(1.4)
A 		32
B 21.2
(-2.9)
A 		39.5
(-0.1)
A 		59.7
(3)
A 		20.7
(-3)
A 		39
C 44.5
(-2.6)
A 		68.9
(-0.4)
A 		40.2
(-3)
A 		106.8
(3)
A 		67
avr 38.3
(-3) 		60.8
(1.7) 		60.5
(1.7) 		66.9
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 113.6
(3)
A 		61
(-0.9)
A 		32.4
(-3)
A 		38
(-2.6)
A 		48.9
(-1.8)
A 		45.2
(-2.1)
A 		81
B 77.8
(2.5)
A 		68.1
(1.6)
A 		83.9
(3)
A 		63.5
(1.3)
A 		13.7
(-3)
A 		61.3
(1.1)
A 		70
C 26.2
(-3)
A 		67
(2.6)
A 		45
(-0.4)
A 		69.6
(3)
A 		35.4
(-1.7)
A 		54
(0.8)
A 		43
avr 72.5
(3) 		65.4
(1.9) 		53.8
(0.2) 		57
(0.7) 		32.7
(-3) 		53.5
(0.1) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 18
(1.1)
A 		16.1
(0.1)
A 		21.3
(3)
A 		10.7
(-3)
A 		11
B 6.8
(-1.5)
A 		9.8
(0.4)
A 		13.8
(3)
A 		4.4
(-3)
A 		9
C 14.7
(-2.3)
A 		19.8
(3)
A 		14
(-3)
A 		18
(1.1)
A 		6
avr 13.2
(-0.6) 		15.2
(1.7) 		16.4
(3) 		11
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 20.9
(2.7)
A 		21.7
(3)
A 		7.1
(-3)
A 		9.6
(-2)
A 		14.8
(0.2)
A 		11
(-1.4)
A 		15
B 27.1
(3)
A 		22.7
(1.8)
A 		20.4
(1.1)
A 		16.8
(0.1)
A 		5.6
(-3)
A 		22.9
(1.8)
A 		22
C 9.7
(-3)
A 		20.4
(3)
A 		11.4
(-2)
A 		14
(-0.6)
A 		11.4
(-2)
A 		18.1
(1.7)
A 		11
avr 19.2
(1.7) 		21.6
(3) 		13
(-1.7) 		13.5
(-1.4) 		10.6
(-3) 		17.3
(0.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185167_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8703
Sequence Type Exemplar sequence
Representative Public ID Y116A8A.4 NCBI
Target Description Y116A8A.4 /REP_DB=WormBase Gene ID /WP=CE23308 /TR=Q9U2W3 /GB=CAB55162.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070592(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070592 NCBI Caenorhabditis elegans Y116A8A.4 (Y116A8A.4) mRNA, complete cds. 11/11 A 
SNAP00000018648 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16822828:16824452:1 11/11 None
GENEFINDER00000018660 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16822828:16824452:1 11/11 None
Y116A8A.4 ENSEMBL cdna:known chromosome:CEL140:IV:16822828:16824452:1 gene:Y116A8A.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16822833-16824458(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116A8A.4
Entrez Gene 190985 Entrez gene
SwissProt Q9U2W3 EMBL-EBI
WormBase CE23308 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55162 Hypothetical protein Y116A8A.4 [Caenorhabditis elegans] ref|NP_502993.1| Y116A8A.4 [Caenorhabditis elegans] 0.0
blast CAB55163 Hypothetical protein Y116A8A.6 [Caenorhabditis elegans] ref|NP_502994.1| Y116A8A.6 [Caenorhabditis elegans] 0.0
blast CAE68001 Hypothetical protein CBG13611 [Caenorhabditis briggsae] 2.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR005514 EMBL-EBI Protein of unknown function DUF316 3.0E-71
Sequence
Target Sequence 
>C. ELEGANS:185167_AT
ggaagttggtggtccattggtacagaatgtatcaggaaaggctacagtaattggactcaa
ggctccaggttcgagggaaaattgtgaactcttctacgatctttcgaagcttcaaaagga
aatttgtgattattctggagtatgtggatatgagaaaccaactcttacaacggagcccac
gccagtcactactgaaaaatctacagtttcaacaaccatttctacttcactcgaaacgac
tataatgcaggcttcgtcagcttcgccaacttcgatcaagccatctacgacgacagaacc
atcgcctttgcaagcttcaagcaagccagctacagaaccattgcttcgacctgaatcgac
tagacgagcctcatcatcagcttcaagcaagcctgaagtccagacaacaatcccaacaga
aatccgaacttcttctttgccaacgccgttcctgaaaacgtctacaacagtcactacgac
aactcctgaacctgcaactgttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAAGTTGGTGGTCCATTGGTACAG 132 531 714 Antisense
GAAAGGCTACAGTAATTGGACTCAA 472 359 749 Antisense
TCAGCTTCGCCAACTTCGATCAAGC 164 625 970 Antisense
AACTTCGATCAAGCCATCTACGACG 378 139 981 Antisense
AGCCATCTACGACGACAGAACCATC 653 83 992 Antisense
ACCATTGCTTCGACCTGAATCGACT 77 87 1050 Antisense
CGACTAGACGAGCCTCATCATCAGC 407 249 1070 Antisense
AGAAATCCGAACTTCTTCTTTGCCA 238 71 1131 Antisense
TTTGCCAACGCCGTTCCTGAAAACG 670 665 1149 Antisense
CCTGAAAACGTCTACAACAGTCACT 58 265 1164 Antisense
AACTCCTGAACCTGCAACTGTTGAT 497 141 1194 Antisense
Sequence Source Affymetrix Proprietary Database