[Home] | [Total List]

[185166_s_at]

Description Y48D7A.2 /REP_DB=WormBase Gene ID /WP=CE24387 /TR=Q9N4V0 /GB=AAF60678.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 41      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 47      6grp_total > 40      4grp_total > 14      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4725
1 2 3 4 range
A 4343.8
(1.1)
P 		1878.3
(-2.2)
P 		1314.4
(-3)
P 		5721.3
(3)
P 		4407
B 4718.4
(2.4)
P 		1990.5
(-1.9)
P 		1306.6
(-3)
P 		5129.9
(3)
P 		3823
C 4224.2
(0.7)
P 		1345.5
(-3)
P 		1364.4
(-3)
P 		6031.9
(3)
P 		4686
avr 4428.8
(1.3) 		1738.1
(-2.4) 		1328.5
(-3) 		5627.7
(3) 		4299

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1838
1 2 3 4 5 6 range
A 3337.4
(0.4)
P 		3073.6
(-0.9)
P 		3828.6
(3)
P 		3391.1
(0.7)
P 		2772.9
(-2.5)
P 		2674.7
(-3)
P 		1154
B 3456.1
(-1.4)
P 		4005.1
(1.2)
P 		4397.9
(3)
P 		3877.8
(0.6)
P 		3118.7
(-3)
P 		3135.3
(-2.9)
P 		1279
C 2771.2
(-2)
P 		3889.8
(3)
P 		3191.5
(-0.2)
P 		3716.2
(2.2)
P 		2559.9
(-3)
P 		3168.7
(-0.3)
P 		1330
avr 3188.2
(-0.7) 		3656.2
(2.1) 		3806
(3) 		3661.7
(2.1) 		2817.2
(-3) 		2992.9
(-1.9) 		989
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1279
1 2 3 4 range
A 1581.6
(3)
P 		407.7
(-2.7)
P 		343.6
(-3)
P 		837.5
(-0.6)
P 		1238
B 1504.7
(3)
P 		491.6
(-2.1)
P 		302.8
(-3)
P 		1093.2
(0.9)
P 		1202
C 1398.3
(3)
P 		386.8
(-3)
P 		475.5
(-2.5)
P 		1017.1
(0.7)
P 		1012
avr 1494.9
(3) 		428.7
(-2.7) 		374
(-3) 		982.6
(0.3) 		1121

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 718
1 2 3 4 5 6 range
A 615.2
(-3)
P 		1093.1
(3)
P 		833.8
(-0.3)
P 		860.1
(0.1)
P 		836.7
(-0.2)
P 		651.2
(-2.5)
P 		478
B 1202.5
(0.4)
P 		1333.1
(3)
P 		1067.9
(-2.2)
P 		1027.1
(-3)
P 		1267.1
(1.7)
P 		1169.1
(-0.2)
P 		306
C 1027.2
(0.8)
P 		1186.9
(3)
P 		812.3
(-2.1)
P 		747.3
(-3)
P 		828.4
(-1.9)
P 		1060.8
(1.3)
P 		440
avr 948.3
(-1.7) 		1204.4
(3) 		904.7
(-2.5) 		878.2
(-3) 		977.4
(-1.2) 		960.4
(-1.5) 		326
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185166_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18276
Sequence Type Exemplar sequence
Representative Public ID Y48D7A.2 NCBI
Target Description Y48D7A.2 /REP_DB=WormBase Gene ID /WP=CE24387 /TR=Q9N4V0 /GB=AAF60678.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076113(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076113 NCBI Caenorhabditis elegans FMRF-Like Peptide family member (flp-18) (flp-18) mRNA, complete cds. 10/11 None
GENEFINDER00000042917 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3012198:3014952:-1 10/11 None
SNAP00000042916 ENSEMBL cdna:SNAP chromosome:CEL140:X:3012408:3013245:-1 10/11 None
Y48D7A.2b ENSEMBL cdna:known chromosome:CEL140:X:3012173:3014277:-1 gene:Y48D7A.2 11/11 None
Y48D7A.2a ENSEMBL cdna:known chromosome:CEL140:X:3012408:3015306:-1 gene:Y48D7A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3012407-3015306(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol flp-18
Ensembl Y48D7A.2
Entrez Gene 180587 Entrez gene
SwissProt Q9N4V0 EMBL-EBI
WormBase CE33736 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7218 neuropeptide signaling pathway inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast Q9N4V0 FMRFamide-like neuropeptide 18 precursor [Contains: SVPGVLRF-amide 1; SVPGVLRF-amide 2; SVPGVLRF-amide 3] 1.0E-159
blast Q9N4V0 FMRFamide-like neuropeptide 18 precursor [Contains: SVPGVLRF-amide 1; SVPGVLRF-amide 2; SVPGVLRF-amide 3] 1.0E-126
blast NP_508514 FMRF-Like Peptide family member (flp-18) [Caenorhabditis elegans] gb|AAO91690.1| Fmrf-like peptide protein 18 [Caenorhabditis elegans] 1.0E-117
blast Q9N4V0 FMRFamide-like neuropeptide 18 precursor [Contains: SVPGVLRF-amide 1; SVPGVLRF-amide 2; SVPGVLRF-amide 3] 1.0E-117
blast CAE68363 Hypothetical protein CBG14115 [Caenorhabditis briggsae] 1.0E-112
blast CAE68363 Hypothetical protein CBG14115 [Caenorhabditis briggsae] 1.0E-110
Protein Domains
Database ID Description E-Value
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 4.0
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 3.4
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 3.4
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 4.8
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 2.1
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 2.3
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 1.9
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 4.0
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 3.4
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 3.4
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 4.8
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 2.1
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 2.3
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 1.9
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 4.0
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 3.4
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 3.4
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 4.8
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 2.1
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 4.0
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 3.4
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 3.4
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 4.8
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 2.1
Pfam IPR002544 EMBL-EBI FMRFamide-related peptide 1.9
Trans Membrane
ID Number Of Domains Domain Boundaries
Y48D7A.2a 1 29-51
GENEFINDER00000042917 1 278-300
Sequence
Target Sequence 
>C. ELEGANS:185166_S_AT
gacatgcaacggtggtcgggcgttcttctcatttcgctgtgttgtttgcttcgtggggcg
ctcgcatataccgaaccaatctatgaaatcgtcgaagaagacataccagcagaggatatc
gaagtgactcggaccaacgagaaacaagacggtcgggtattctcaaaaagagactttgat
ggggcgatgccaggtgtgttgcgctttggaaaacgtggaggtgtttgggaaaaaagagaa
agcagtgtgcagaaaaaagaaatgccgggagtgctccgtttcggtaaacgtgcatatttt
gacgagaagaaaagtgttccaggagttcttcgcttcgggaaacgctcatatttcgatgag
aagaaaagtgttccaggcgttcttcgtttcggaaaacgtgatgtgccaatggacaaacgg
gagatcccaggagtgttgagattcggaaagagagattacatggctgattcgttcgacaag
cgcagtgaagtgcccggagttctccgtttcggaaaacgcgatgttcccggtgtattgaga
tttggaaagcgatccgacttggaagagcattacgcaggggttttgctcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACATGCAACGGTGGTCGGGCGTTC 172 367 313 Antisense
AAAGAGACTTTGATGGGGCGATGCC 573 119 479 Antisense
GCGATGCCAGGTGTGTTGCGCTTTG 137 291 496 Antisense
GAAATGCCGGGAGTGCTCCGTTTCG 42 363 571 Antisense
AAGTGTTCCAGGAGTTCTTCGCTTC 260 159 624 Antisense
TCTTCGCTTCGGGAAACGCTCATAT 669 617 639 Antisense
GAAAAGTGTTCCAGGCGTTCTTCGT 695 353 675 Antisense
GGCTGATTCGTTCGACAAGCGCAGT 397 539 774 Antisense
AAGCGCAGTGAAGTGCCCGGAGTTC 346 149 790 Antisense
AAAACGCGATGTTCCCGGTGTATTG 491 131 825 Antisense
GCATTACGCAGGGGTTTTGCTCAAG 7 307 879 Antisense
Sequence Source Affymetrix Proprietary Database