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[185165_s_at] --- /// Ubiquitin carboxyl-terminal hydrolases family 2 /// --- /// ---

Description F09E5.10 /REP_DB=WormBase Gene ID /WP=CE02605 /TR=Q19256 /GB=AAA79350.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 34      4grp_high_8_8 > 17      6grp_total > 11      4grp_total > 31      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 261
1 2 3 4 range
A 376.5
(3)
P 		172.2
(-2.1)
A 		134.8
(-3)
P 		335.8
(2)
P 		242
B 362.1
(3)
P 		136.4
(-2.5)
A 		115.9
(-3)
P 		239.1
(0)
P 		246
C 342.3
(3)
P 		148.2
(-2.5)
P 		131
(-3)
P 		234.9
(-0)
P 		211
avr 360.3
(3) 		152.3
(-2.4) 		127.2
(-3) 		269.9
(0.7) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 168.4
(-3)
A 		358.4
(3)
P 		230.9
(-1)
P 		207
(-1.8)
P 		196
(-2.1)
P 		209
(-1.7)
P 		190
B 274.1
(3)
P 		274.2
(3)
P 		259
(2)
P 		204.4
(-1.8)
P 		187
(-3)
P 		197.9
(-2.3)
P 		87
C 226.7
(-1.7)
P 		346.3
(3)
P 		262.5
(-0.3)
P 		294.1
(0.9)
P 		194.5
(-3)
P 		259.7
(-0.4)
P 		152
avr 223.1
(-1.6) 		326.3
(3) 		250.8
(-0.4) 		235.2
(-1.1) 		192.5
(-3) 		222.2
(-1.7) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 137.1
(3)
P 		37.4
(-2.9)
A 		35.2
(-3)
P 		49.2
(-2.2)
P 		102
B 115.5
(3)
P 		33.7
(-2.5)
A 		26.9
(-3)
P 		51
(-1.4)
P 		89
C 113.3
(3)
P 		42.6
(-2.8)
P 		45.7
(-2.5)
P 		39.6
(-3)
P 		74
avr 122
(3) 		37.9
(-2.9) 		35.9
(-3) 		46.6
(-2.3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 97
1 2 3 4 5 6 range
A 31
(-3)
A 		127.5
(3)
P 		50.3
(-1.8)
P 		52.5
(-1.7)
P 		59.2
(-1.2)
P 		50.9
(-1.8)
P 		97
B 95.4
(3)
P 		91.3
(2.4)
P 		62.9
(-1.7)
P 		54.1
(-3)
P 		76
(0.2)
P 		73.8
(-0.1)
P 		41
C 84
(0.2)
P 		105.7
(3)
P 		66.8
(-2)
P 		59.2
(-3)
P 		62.9
(-2.5)
P 		86.9
(0.6)
P 		47
avr 70.1
(-1.3) 		108.2
(3) 		60
(-2.5) 		55.3
(-3) 		66
(-1.8) 		70.5
(-1.3) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185165_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5427
Sequence Type Exemplar sequence
Representative Public ID F09E5.10 NCBI
Target Description F09E5.10 /REP_DB=WormBase Gene ID /WP=CE02605 /TR=Q19256 /GB=AAA79350.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062599(11), NM_001027477(11), NM_067338(11), NM_058517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062599 NCBI Caenorhabditis elegans F09E5.10 (F09E5.10) mRNA, complete cds. 11/11 A 
NM_001027477 NCBI Caenorhabditis elegans K01A11.5 (K01A11.5) mRNA, complete cds. 11/11 None
NM_067338 NCBI Caenorhabditis elegans Y43F4B.2 (Y43F4B.2) mRNA, complete cds. 11/11 None
NM_058517 NCBI Caenorhabditis elegans Y20F4.4 (Y20F4.4) mRNA, complete cds. 11/11 A 
GENEFINDER00000004345 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2034533:2039630:-1 11/11 None
SNAP00000004336 ENSEMBL cdna:SNAP chromosome:CEL140:I:2037381:2044428:-1 11/11 None
SNAP00000044009 ENSEMBL cdna:SNAP chromosome:CEL140:II:5348234:5350219:-1 10/11 None
GENEFINDER00000044028 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5347719:5350516:-1 10/11 None
GENEFINDER00000007808 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:13293197:13295739:-1 11/11 None
SNAP00000007798 ENSEMBL cdna:SNAP chromosome:CEL140:III:13293482:13298754:-1 11/11 None
GENEFINDER00000013906 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3445968:3452081:-1 11/11 None
SNAP00000013904 ENSEMBL cdna:SNAP chromosome:CEL140:III:3448836:3451084:-1 11/11 None
Y20F4.4 ENSEMBL cdna:known chromosome:CEL140:I:2034385:2043813:-1 gene:Y20F4.4 11/11 A 
F09E5.10 ENSEMBL cdna:known chromosome:CEL140:II:5348066:5350516:-1 gene:F09E5.10 11/11 A 
K01A11.5 ENSEMBL cdna:known chromosome:CEL140:III:3448551:3451084:-1 gene:K01A11.5 11/11 A 
Y43F4B.2 ENSEMBL cdna:known chromosome:CEL140:III:13293482:13295804:-1 gene:Y43F4B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ubiquitin carboxyl-terminal hydrolases family 2


Ensembl Y20F4.4
F09E5.10
K01A11.5
Y43F4B.2
Entrez Gene 173905 Entrez gene
176747 Entrez gene
245999 Entrez gene
3565365 Entrez gene
SwissProt Q19256 EMBL-EBI
Q6A4R1 EMBL-EBI
Q95XA7 EMBL-EBI
O45931 EMBL-EBI
WormBase CE02605 Wormbase
CE36444 Wormbase
CE30313 Wormbase
CE28790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA79350 Hypothetical protein F09E5.10 [Caenorhabditis elegans] ref|NP_495000.1| F09E5.10 [Caenorhabditis elegans] 0.0
blast NP_490918 Y20F4.4 [Caenorhabditis elegans] gb|AAL00866.2| Hypothetical protein Y20F4.4 [Caenorhabditis elegans] 0.0
blast CAH10807 Hypothetical protein K01A11.5 [Caenorhabditis elegans] ref|NP_001022648.1| K01A11.5 [Caenorhabditis elegans] 0.0
blast CAA16331 Hypothetical protein Y43F4B.2 [Caenorhabditis elegans] ref|NP_499739.1| Y43F4B.2 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 2.5E-5
Sequence
Target Sequence 
>C. ELEGANS:185165_S_AT
atcgacgaatagttttccaccagccctcgattctgcctattttaaaggaggaaaatgttg
tttagacagttctggaacgtttgagtctaataaggatttgctagttgtgtggcaagcaga
ggaagctgaatctttgtatggtgcgcacagcttgcatttggatgggaaattctcagaaat
tccgaaaaattatcgacagctttacatcgcaacagtcacggatctcgatacgaacgtggc
agttccattggtttttgctttgtgtggctctgccaaagaagatttgtacagacgtaaacg
ttggttatatttattaaatttatcaacctatccagactttgaagtggccagtgttaatgc
gagcagagctgtgtggccgaatgcggacattttcggatgttggcgtcacttcaaagtgaa
tctttttaaaaatctgcgaaaagctgttggagacgatatcaataagccggaattcgtgaa
tcttttaaaatcgatttatactctcagttttgctccacacgacaaaatttcttcagctac
ctcgaaaaattctattttggagaagatgctcgatatcccgttgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGACGAATAGTTTTCCACCAGCC 96 35 1149 Antisense
CCCTCGATTCTGCCTATTTTAAAGG 26 261 1172 Antisense
AGCTTTACATCGCAACAGTCACGGA 456 77 1346 Antisense
GCAACAGTCACGGATCTCGATACGA 596 319 1357 Antisense
CAGTTCCATTGGTTTTTGCTTTGTG 318 207 1388 Antisense
TTGCTTTGTGTGGCTCTGCCAAAGA 694 703 1403 Antisense
AAATTTATCAACCTATCCAGACTTT 341 115 1464 Antisense
AAGTGGCCAGTGTTAATGCGAGCAG 567 159 1490 Antisense
CAGAGCTGTGTGGCCGAATGCGGAC 252 205 1512 Antisense
ATCGATTTATACTCTCAGTTTTGCT 47 37 1638 Antisense
GAAGATGCTCGATATCCCGTTGATT 471 337 1710 Antisense
Sequence Source Affymetrix Proprietary Database