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[185164_at]

Description Y43F8B.13 /REP_DB=WormBase Gene ID /WP=CE21897 /TR=Q9XWY2 /GB=CAA21504.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 24.2
(-2.8)
A 		66.6
(1.8)
A 		22.3
(-3)
A 		77.9
(3)
A 		56
B 6.5
(-2.8)
A 		9.8
(-2.1)
A 		35.6
(3)
A 		5.4
(-3)
A 		30
C 47.7
(1.7)
A 		39.7
(0.4)
A 		56.6
(3)
A 		17
(-3)
A 		40
avr 26.1
(-3) 		38.7
(3) 		38.2
(2.8) 		33.4
(0.5) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 26.2
(-1)
A 		18.9
(-1.7)
A 		10.7
(-2.5)
A 		48.5
(1)
A 		69.4
(3)
A 		5.2
(-3)
A 		64
B 44.7
(2.9)
A 		32.6
(0.7)
A 		45.3
(3)
A 		23.6
(-1)
A 		37.6
(1.6)
A 		12.4
(-3)
A 		33
C 54.3
(3)
A 		54.4
(3)
A 		18.6
(-2.1)
A 		33.5
(0)
A 		43.9
(1.5)
A 		12.1
(-3)
A 		42
avr 41.7
(1.7) 		35.3
(0.8) 		24.9
(-0.8) 		35.2
(0.8) 		50.3
(3) 		9.9
(-3) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 8.8
(-0.9)
A 		14.5
(3)
A 		5.8
(-3)
A 		11.4
(0.9)
A 		9
B 2.1
(-2.2)
A 		2.4
(-2)
A 		8.3
(3)
A 		1.2
(-3)
A 		7
C 15.8
(1.6)
A 		11.4
(0)
A 		19.7
(3)
A 		2.9
(-3)
A 		17
avr 8.9
(0.6) 		9.4
(1.1) 		11.3
(3) 		5.2
(-3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 4.8
(-1.9)
A 		6.7
(-1.4)
A 		2.3
(-2.7)
A 		12.3
(0.4)
A 		21
(3)
A 		1.3
(-3)
A 		20
B 15.6
(3)
A 		10.8
(0.4)
A 		11
(0.5)
A 		6.3
(-2.1)
A 		15.3
(2.8)
A 		4.6
(-3)
A 		11
C 20.1
(3)
A 		16.6
(1.7)
A 		4.7
(-2.8)
A 		6.7
(-2)
A 		14.2
(0.8)
A 		4.1
(-3)
A 		16
avr 13.5
(1.5) 		11.4
(0.6) 		6
(-1.8) 		8.4
(-0.7) 		16.8
(3) 		3.3
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185164_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12648
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.13 NCBI
Target Description Y43F8B.13 /REP_DB=WormBase Gene ID /WP=CE21897 /TR=Q9XWY2 /GB=CAA21504.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075385(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075385 NCBI Caenorhabditis elegans Y43F8B.13 (Y43F8B.13) mRNA, complete cds. 11/11 None
GENEFINDER00000027194 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19458590:19466332:1 11/11 None
Y43F8B.13 ENSEMBL cdna:known chromosome:CEL140:V:19458590:19466332:1 gene:Y43F8B.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19458589-19466332(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8B.13
Entrez Gene 180275 Entrez gene
SwissProt Q9XWY2 EMBL-EBI
WormBase CE21897 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21504 Hypothetical protein Y43F8B.13 [Caenorhabditis elegans] ref|NP_507786.1| Y43F8B.13 [Caenorhabditis elegans] 0.0
blast CAB03917 Hypothetical protein C25F9.9 [Caenorhabditis elegans] ref|NP_507779.1| C25F9.9 [Caenorhabditis elegans] 2.0E-28
blast CAB07268 Hypothetical protein M04C3.1a [Caenorhabditis elegans] emb|CAB03924.1| Hypothetical protein M04C3.1a [Caenorhabditis elegans] ref|NP_507782.1| M04C3.1a [Caenorhabditis elegans] 2.0E-24
Sequence
Target Sequence 
>C. ELEGANS:185164_AT
gatcaatcacgctaaacactgtcataagaacttctacgctttgggatttctcactgataa
atttcgacagagtattctcagatcaatgcggagcatggcagatcatgaattatacgactt
tgacaaatttttgacgagagcaagggaaatgtcaaagcgaaagccacccgatgttttgtt
attttacgagctaatttggggcgccgcggtcgtgtgtgtgaagcagttttttcttgaaaa
attcaaaattctaatgaaaaatcattatgttattagaaaaataattacaattattacctc
actaaaccctgcgaatccttctgtctgcgaaaaactatctacagcatgggattttgctga
gagatgtcataaaaacttctttaacattgtgtttttgccagtggaattgcgacaagagat
tttgaaatcgataaaaggaatgaggaagagtcttgaaaatgctgatcttcaaaatattga
aacaattttgaactttgagtttaaaataatcgaacaccggaacgattggactgtgaagat
agggaacaacaagctgccatac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCAATCACGCTAAACACTGTCAT 681 421 813 Antisense
AACACTGTCATAAGAACTTCTACGC 76 137 827 Antisense
TCTACGCTTTGGGATTTCTCACTGA 102 615 845 Antisense
GAAAGCCACCCGATGTTTTGTTATT 268 359 971 Antisense
TTACGAGCTAATTTGGGGCGCCGCG 23 671 996 Antisense
CGCGGTCGTGTGTGTGAAGCAGTTT 457 253 1017 Antisense
CAATTATTACCTCACTAAACCCTGC 332 179 1100 Antisense
GCGAATCCTTCTGTCTGCGAAAAAC 684 285 1123 Antisense
TAACATTGTGTTTTTGCCAGTGGAA 164 639 1194 Antisense
TCGAACACCGGAACGATTGGACTGT 669 597 1322 Antisense
GATAGGGAACAACAAGCTGCCATAC 378 423 1350 Antisense
Sequence Source Affymetrix Proprietary Database