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[185160_at]

Description F18A12.2 /REP_DB=WormBase Gene ID /WP=CE09455 /TR=O16794 /GB=AAB66074.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 57      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.7
(-3)
A 		10.6
(-0.2)
A 		15.1
(3)
A 		9.1
(-1.3)
A 		8
B 7.9
(-1)
A 		11.4
(3)
A 		9.6
(0.9)
A 		6.2
(-3)
A 		5
C 7.1
(-0.9)
A 		9.6
(3)
A 		9.5
(2.8)
A 		5.8
(-3)
A 		4
avr 7.2
(-2.7) 		10.5
(1.8) 		11.4
(3) 		7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 10.1
(0.6)
A 		14.4
(3)
A 		7.6
(-0.7)
A 		3.5
(-3)
A 		8.7
(-0.1)
A 		4.1
(-2.7)
A 		11
B 6.2
(-0.6)
A 		4.3
(-2.4)
A 		5
(-1.8)
A 		4.1
(-2.6)
A 		3.7
(-3)
A 		10
(3)
A 		6
C 5.3
(-1.6)
A 		5.9
(-1)
A 		9.9
(3)
A 		3.9
(-3)
A 		6.5
(-0.4)
A 		4.6
(-2.3)
A 		6
avr 7.2
(1.6) 		8.2
(3) 		7.5
(2) 		3.8
(-3) 		6.3
(0.4) 		6.2
(0.3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.4
(-0.6)
A 		2.3
(-0.8)
A 		4
(3)
A 		1.3
(-3)
A 		3
B 2.5
(1.8)
A 		2.8
(3)
A 		2.2
(0.6)
A 		1.3
(-3)
A 		2
C 2.3
(0.4)
A 		2.8
(1.7)
A 		3.3
(3)
A 		1
(-3)
A 		2
avr 2.4
(0.6) 		2.6
(1.2) 		3.2
(3) 		1.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.9
(-1.6)
A 		5.1
(3)
A 		1.7
(-1.9)
A 		0.9
(-3)
A 		2.6
(-0.6)
A 		1
(-2.9)
A 		4
B 2.1
(-0.7)
A 		1.4
(-2.3)
A 		1.2
(-2.8)
A 		1.1
(-3)
A 		1.5
(-2.1)
A 		3.7
(3)
A 		3
C 1.9
(0.9)
A 		1.8
(0.5)
A 		2.5
(3)
A 		0.8
(-3)
A 		2.1
(1.6)
A 		1.5
(-0.5)
A 		2
avr 2
(0.5) 		2.8
(3) 		1.8
(-0.2) 		0.9
(-3) 		2.1
(0.8) 		2.1
(0.8) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185160_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4538
Sequence Type Exemplar sequence
Representative Public ID F18A12.2 NCBI
Target Description F18A12.2 /REP_DB=WormBase Gene ID /WP=CE09455 /TR=O16794 /GB=AAB66074.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062135(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062135 NCBI Caenorhabditis elegans F18A12.2 (F18A12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000014583 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3415303:3416220:1 10/11 None
F18A12.2 ENSEMBL cdna:known chromosome:CEL140:II:3415000:3416220:1 gene:F18A12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014579 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3414487-3416219(+) 93.82 100.0
Public Domain and Genome References
Gene Title
Ensembl F18A12.2
Entrez Gene 184629 Entrez gene
SwissProt O16794 EMBL-EBI
WormBase CE36826 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66074 Hypothetical protein F18A12.2 [Caenorhabditis elegans] ref|NP_494536.2| F18A12.2 [Caenorhabditis elegans] 1.0E-123
blast AAB66074 Hypothetical protein F18A12.2 [Caenorhabditis elegans] ref|NP_494536.2| F18A12.2 [Caenorhabditis elegans] 3.0E-95
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494536.2 2 12-34,165-187
F18A12.2 2 12-34,165-187
GENEFINDER00000014583 2 7-29,112-134
Sequence
Target Sequence 
>C. ELEGANS:185160_AT
tacaacatcgacagggcttgcctcgcctacgtgcctatttcaggcatgcctcgcctacgt
gcttatttcaggcatgcctcgcctacgtgcttatttcaggcatgcctcgcctacgtgcat
tcctcaaaaagtgctaaaatgtctcagcctagtgtaataattcctcagcaaaatgcgatc
attcctcaaggaagtccagaagcgtctcagcaaagggaaccaacccctccgaaacctgaa
gagccgccgaacgagccgacatggttagacaagacaatatatcatccatggacgccatac
atcacaataattgtgacccttgcgcttcccataatctttgttttgggctcctcgttgtac
ttgagaagcgaagaaacagaaatcaaagttccaagtaacttgtctgtgaatccgatattt
tcaacaaatgcgacaacgtcatcacaaactacgaagccaaaattgatttataacgagatg
aagaagccccggacaactttgaaaccatcaactgctccgccagaatcctcaaaggcccca
gcatctactggaaccactttggcgacgaatcctacgattactggtccacctggaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACAACATCGACAGGGCTTGCCTCG 433 641 535 Antisense
CGTGCCTATTTCAGGCATGCCTCGC 435 245 564 Antisense
GCCTACGTGCATTCCTCAAAAAGTG 690 281 643 Antisense
GCCGAACGAGCCGACATGGTTAGAC 77 283 780 Antisense
ACAATAATTGTGACCCTTGCGCTTC 386 115 838 Antisense
TAATCTTTGTTTTGGGCTCCTCGTT 385 633 866 Antisense
GGGCTCCTCGTTGTACTTGAGAAGC 687 491 879 Antisense
ACTTTGAAACCATCAACTGCTCCGC 585 99 1030 Antisense
CAAAGGCCCCAGCATCTACTGGAAC 269 191 1064 Antisense
GAACCACTTTGGCGACGAATCCTAC 383 339 1085 Antisense
TACGATTACTGGTCCACCTGGAACT 37 647 1107 Antisense
Sequence Source Affymetrix Proprietary Database