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[185159_at] 7TM chemoreceptor, srx family

Description F59E11.1 /REP_DB=WormBase Gene ID /WP=CE11496 /TR=O45695 /GB=AAG24152.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 33      4grp_high_8_8 > 21      6grp_total > 11      4grp_total > 03      6grp_cgc > 44      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 52.3
(-2.7)
P 		56.8
(-2)
A 		50
(-3)
P 		90.4
(3)
P 		40
B 47.9
(-3)
P 		69.9
(1.5)
P 		59.1
(-0.7)
P 		77
(3)
P 		29
C 72.3
(-0.9)
P 		33.4
(-2.9)
A 		30.9
(-3)
A 		146.7
(3)
P 		116
avr 57.5
(-1.9) 		53.4
(-2.3) 		46.7
(-3) 		104.7
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 66.2
(1.7)
P 		46.4
(-0.5)
P 		55.5
(0.5)
P 		23.7
(-3)
A 		78.1
(3)
P 		35.8
(-1.7)
P 		54
B 56.2
(0.2)
P 		74.2
(3)
P 		56.6
(0.3)
P 		35.1
(-3)
P 		35
(-3)
P 		45.6
(-1.4)
P 		39
C 38.7
(-2.1)
P 		85.4
(3)
P 		62.4
(0.5)
A 		47.9
(-1.1)
A 		34
(-2.6)
A 		30.1
(-3)
A 		55
avr 53.7
(0.3) 		68.7
(3) 		58.2
(1.1) 		35.6
(-3) 		49
(-0.6) 		37.2
(-2.7) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 19
(3)
P 		12.3
(-3)
A 		13.1
(-2.3)
P 		13.2
(-2.2)
P 		7
B 15.3
(-0.3)
P 		17.3
(3)
P 		13.7
(-3)
P 		16.4
(1.5)
P 		4
C 23.9
(2.7)
P 		9.6
(-3)
A 		10.8
(-2.5)
A 		24.7
(3)
P 		15
avr 19.4
(3) 		13.1
(-2.5) 		12.5
(-3) 		18.1
(1.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 12.2
(-0.9)
P 		16.5
(0.6)
P 		12.1
(-0.9)
P 		6
(-3)
A 		23.6
(3)
P 		8.7
(-2.1)
P 		18
B 19.5
(1)
P 		24.7
(3)
P 		13.8
(-1.2)
P 		9.3
(-3)
P 		14.2
(-1.1)
P 		17
(0)
P 		15
C 14.3
(-1.3)
P 		26.1
(3)
P 		15.9
(-0.7)
A 		9.6
(-3)
A 		11
(-2.5)
A 		10.1
(-2.8)
A 		17
avr 15.3
(-0) 		22.4
(3) 		13.9
(-0.6) 		8.3
(-3) 		16.3
(0.4) 		11.9
(-1.5) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185159_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12214
Sequence Type Exemplar sequence
Representative Public ID F59E11.1 NCBI
Target Description F59E11.1 /REP_DB=WormBase Gene ID /WP=CE11496 /TR=O45695 /GB=AAG24152.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072927(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072927 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-1) (srx-1) mRNA, complete cds. 10/11 None
F59E11.1 ENSEMBL cdna:known chromosome:CEL140:V:9006295:9007553:1 gene:F59E11.1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000020057 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9006295-9007554(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-1
Ensembl F59E11.1
Entrez Gene 186620 Entrez gene
SwissProt O45695 EMBL-EBI
WormBase CE35886 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24152 Serpentine receptor, class x protein 1 [Caenorhabditis elegans] ref|NP_505328.2| Serpentine Receptor, class X family member (srx-1) [Caenorhabditis elegans] 1.0E-179
blast CAE72067 Hypothetical protein CBG19153 [Caenorhabditis briggsae] 1.0E-136
blast CAE72070 Hypothetical protein CBG19156 [Caenorhabditis briggsae] 9.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505328.2 7 15-37,50-72,87-109,128-150,181-200,228-250,260-282
F59E11.1 7 15-37,50-72,87-109,128-150,181-200,228-250,260-282
Sequence
Target Sequence 
>C. ELEGANS:185159_AT
agatgggcgctttacactagttttcgctgttgctaaaagttacattgttcaatatgtctt
tccatgctgctcatttcttgtggatcaaactgttctctcatattcatattttcaaattga
aaatattacaaattacactgatcacagcgatattccattaaatgccttgagctcaattgt
tcctgttatctgctactcatggattttctacacaatccgaagtgctcataaatcgattac
tcctaatatggcaccagaacatcaaaagcggcagggtcgccaagagttatcgtatgcaat
gcagttctgtttgatttccatgttctatacgttttcctggattatgttcagagtttttcc
aattatttttgttggacgacatattgagtggtttattttaacttcaatgtgtcatgtatt
caattgtagtgccaacgcgtttgtatatattttgtttaatcaagaaattcggaaaatctt
agctatgcacaagtttctacgcatttctggaattgcaacaactgattacacccattctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGGGCGCTTTACACTAGTTTTC 143 59 330 Antisense
TCAATATGTCTTTCCATGCTGCTCA 319 633 378 Antisense
CATGCTGCTCATTTCTTGTGGATCA 181 211 392 Antisense
GATCAAACTGTTCTCTCATATTCAT 11 423 412 Antisense
ATGCCTTGAGCTCAATTGTTCCTGT 518 41 491 Antisense
GTTCCTGTTATCTGCTACTCATGGA 647 441 508 Antisense
GGGTCGCCAAGAGTTATCGTATGCA 254 497 603 Antisense
GCAGTTCTGTTTGATTTCCATGTTC 231 313 630 Antisense
ATGTTCTATACGTTTTCCTGGATTA 510 47 649 Antisense
GCACAAGTTTCTACGCATTTCTGGA 451 317 816 Antisense
GCAACAACTGATTACACCCATTCTC 382 319 844 Antisense
Sequence Source Affymetrix Proprietary Database