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[185158_s_at]

Description C33C12.4 /REP_DB=WormBase Gene ID /WP=CE08552 /TR=O16576 /GB=AAB66054.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 24      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 2.8
(-3)
A 		31
(3)
A 		9.2
(-1.6)
A 		13.3
(-0.8)
A 		28
B 6.4
(-1.6)
A 		11.1
(0.2)
A 		2.6
(-3)
A 		18.6
(3)
A 		16
C 34.3
(1.2)
A 		6.4
(-3)
A 		45.9
(3)
A 		33.1
(1.1)
A 		40
avr 14.5
(-3) 		16.2
(-1.6) 		19.2
(0.9) 		21.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 5.4
(-2.9)
A 		3.9
(-3)
A 		29.6
(-1.6)
A 		94.8
(2)
A 		113
(3)
A 		106.5
(2.6)
A 		109
B 26.1
(-2)
A 		6.6
(-3)
A 		16.5
(-2.5)
A 		43.5
(-1.1)
A 		89.9
(1.2)
A 		125.6
(3)
P 		119
C 4.2
(-3)
A 		5.3
(-2.9)
A 		60.1
(-0.2)
A 		7.2
(-2.8)
A 		101.3
(1.9)
A 		123.3
(3)
A 		119
avr 11.9
(-2.7) 		5.3
(-3) 		35.4
(-1.4) 		48.5
(-0.7) 		101.4
(2.1) 		118.5
(3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1
(-3)
A 		6.7
(3)
A 		2.4
(-1.5)
A 		1.9
(-2.1)
A 		6
B 2
(-0.5)
A 		2.7
(0.7)
A 		0.6
(-3)
A 		4
(3)
A 		3
C 11.4
(1.1)
A 		1.8
(-3)
A 		16
(3)
A 		5.6
(-1.4)
A 		14
avr 4.8
(-0.5) 		3.7
(-3) 		6.3
(3) 		3.8
(-2.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 1
(-3)
A 		1.4
(-2.9)
A 		6.4
(-2)
A 		24
(1.2)
A 		34.1
(3)
A 		25.9
(1.5)
A 		33
B 9.1
(-2.1)
A 		2.2
(-3)
A 		4
(-2.8)
A 		11.5
(-1.7)
A 		36.5
(1.6)
A 		46.8
(3)
P 		45
C 1.6
(-3)
A 		1.6
(-3)
A 		15.3
(-0.9)
A 		1.4
(-3)
A 		32.8
(1.7)
A 		41.3
(3)
A 		40
avr 3.9
(-2.6) 		1.7
(-3) 		8.6
(-1.9) 		12.3
(-1.2) 		34.5
(2.4) 		38
(3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185158_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4920
Sequence Type Exemplar sequence
Representative Public ID C33C12.4 NCBI
Target Description C33C12.4 /REP_DB=WormBase Gene ID /WP=CE08552 /TR=O16576 /GB=AAB66054.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061802 NCBI Caenorhabditis elegans C33C12.4 (C33C12.4) mRNA, complete cds. 11/11 None
GENEFINDER00000027213 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2164530:2166462:-1 11/11 None
C33C12.4 ENSEMBL cdna:known chromosome:CEL140:II:2165491:2166494:-1 gene:C33C12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027203 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2165493-2166461(-) 77.06 77.06
Public Domain and Genome References
Gene Title
Ensembl C33C12.4
Entrez Gene 173573 Entrez gene
SwissProt O16576 EMBL-EBI
WormBase CE31429 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494203 C33C12.4 [Caenorhabditis elegans] gb|AAB66054.2| Hypothetical protein C33C12.4 [Caenorhabditis elegans] 6.0E-85
blast NP_494203 C33C12.4 [Caenorhabditis elegans] gb|AAB66054.2| Hypothetical protein C33C12.4 [Caenorhabditis elegans] 4.0E-63
blast AAF59583 Hypothetical protein Y54G2A.15 [Caenorhabditis elegans] ref|NP_500261.1| Y54G2A.15 [Caenorhabditis elegans] 5.0E-34
blast AAF59583 Hypothetical protein Y54G2A.15 [Caenorhabditis elegans] ref|NP_500261.1| Y54G2A.15 [Caenorhabditis elegans] 5.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494203.2 1 133-155
C33C12.4 1 133-155
GENEFINDER00000027213 1 188-210
Sequence
Target Sequence 
>C. ELEGANS:185158_S_AT
tcctgctattcatcgctcaatgtgcatttggcgaaatcacgaaactttctgaagccgatc
agatcaaatatatgagacgaaccattgatgatacaaaacgtcttgccgaaaaagcaaatt
atacgaaactgagtttcgacgctgcactcgaatctaaagtgttgaaaatggcctgtgacg
atttggagagccagctaggagcaagatttttcgatgcaaagcatgtaacgaatgaaattg
ctaaaatcgatggagtaactcgaattgcttgcatcaaaacggattgtatttatgaagcaa
tcctgccagctgtgacaatcaagtatatgtgtgcattcggataccctgaggaaactacca
cagtcagcagcgcatctttcggaactcagagaattgtaggatgtttctttggaattctcg
tttttgcagttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTGCTATTCATCGCTCAATGTGC 708 593 32 Antisense
GATGATACAAAACGTCTTGCCGAAA 315 411 118 Antisense
GAAACTGAGTTTCGACGCTGCACTC 414 357 156 Antisense
GACGCTGCACTCGAATCTAAAGTGT 364 381 169 Antisense
AATGGCCTGTGACGATTTGGAGAGC 568 161 198 Antisense
CCAGCTAGGAGCAAGATTTTTCGAT 485 273 222 Antisense
GGAGTAACTCGAATTGCTTGCATCA 497 517 283 Antisense
GCAATCCTGCCAGCTGTGACAATCA 303 321 328 Antisense
TATATGTGTGCATTCGGATACCCTG 610 659 355 Antisense
CAGCGCATCTTTCGGAACTCAGAGA 484 203 399 Antisense
TGGAATTCTCGTTTTTGCAGTTTTT 703 545 441 Antisense
Sequence Source Affymetrix Proprietary Database