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[185157_at]

Description Y75B8A.12 /REP_DB=WormBase Gene ID /WP=CE23024 /TR=Q9XW70 /GB=CAA22100.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 24      4grp_high_8_8 > 10      6grp_total > 12      4grp_total > 23      6grp_cgc > 43      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 149.5
(3)
P 		59.8
(-3)
P 		68.1
(-2.4)
P 		62.6
(-2.8)
A 		90
B 136.9
(3)
P 		82.7
(-1)
P 		55.5
(-3)
P 		100.6
(0.3)
P 		81
C 141.5
(1.2)
P 		40.4
(-3)
A 		41.6
(-3)
P 		184.8
(3)
P 		144
avr 142.6
(3) 		61
(-2.6) 		55.1
(-3) 		116
(1.2) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 83.4
(1.7)
P 		97.2
(3)
P 		87.1
(2.1)
P 		31.2
(-3)
A 		64.1
(-0)
P 		60.4
(-0.3)
P 		66
B 118
(3)
P 		108.6
(2.2)
P 		72
(-0.8)
P 		84.8
(0.2)
P 		45.6
(-3)
A 		53.2
(-2.4)
P 		72
C 100.7
(-0.2)
P 		179
(3)
P 		72.6
(-1.4)
P 		63.1
(-1.8)
P 		46.8
(-2.5)
P 		33.8
(-3)
P 		145
avr 100.7
(0.9) 		128.3
(3) 		77.2
(-0.9) 		59.7
(-2.2) 		52.2
(-2.8) 		49.1
(-3) 		79
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 54.4
(3)
P 		13
(-2.5)
P 		17.8
(-1.9)
P 		9.2
(-3)
A 		45
B 43.6
(3)
P 		20.4
(-1.5)
P 		12.9
(-3)
P 		21.4
(-1.3)
P 		31
C 46.8
(3)
P 		11.6
(-3)
A 		14.5
(-2.5)
P 		31.2
(0.3)
P 		35
avr 48.3
(3) 		15
(-3) 		15.1
(-3) 		20.6
(-2) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 15.4
(-1.3)
P 		34.6
(3)
P 		19
(-0.5)
P 		7.9
(-3)
A 		19.3
(-0.4)
P 		14.7
(-1.5)
P 		27
B 41.1
(3)
P 		36.1
(1.7)
P 		17.5
(-3)
P 		22.5
(-1.7)
P 		18.5
(-2.7)
A 		19.8
(-2.4)
P 		24
C 37.3
(0.6)
P 		54.6
(3)
P 		18.5
(-2)
P 		12.7
(-2.8)
P 		15.1
(-2.5)
P 		11.3
(-3)
P 		43
avr 31.3
(0.7) 		41.8
(3) 		18.3
(-2.1) 		14.4
(-3) 		17.6
(-2.3) 		15.3
(-2.8) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185157_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7469
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.12 NCBI
Target Description Y75B8A.12 /REP_DB=WormBase Gene ID /WP=CE23024 /TR=Q9XW70 /GB=CAA22100.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067184(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067184 NCBI Caenorhabditis elegans OSMotic avoidance abnormal family member (osm-12) (osm-12) mRNA, complete cds. 11/11 None
SNAP00000020078 ENSEMBL cdna:SNAP chromosome:CEL140:III:12190931:12202325:-1 11/11 None
GENEFINDER00000020197 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12190931:12202325:-1 11/11 None
Y75B8A.12 ENSEMBL cdna:known chromosome:CEL140:III:12190931:12202325:-1 gene:Y75B8A.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12190926-12202321(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol osm-12
Ensembl Y75B8A.12
Entrez Gene 190704 Entrez gene
SwissProt Q9XW70 EMBL-EBI
WormBase CE23024 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.7103.1.S1_AT similar to Bardet-Biedl syndrome 7 protein isoform b cfa
HG-U133_PLUS_2:235007_AT Bardet-Biedl syndrome 7 hs
HG-U133B:235007_AT Bardet-Biedl syndrome 7 hs
HG-U133_PLUS_2:219688_AT Bardet-Biedl syndrome 7 hs
HG-U133A:219688_AT Bardet-Biedl syndrome 7 hs
HG-U133A_2:219688_AT Bardet-Biedl syndrome 7 hs
HU35KSUBC:RC_W87405_AT Bardet-Biedl syndrome 7 hs
HU35KSUBC:RC_N20583_AT Bardet-Biedl syndrome 7 hs
U133_X3P:G8922614_3P_AT Bardet-Biedl syndrome 7 hs
U133_X3P:HS.136182.0.A1_3P_AT Bardet-Biedl syndrome 7 hs
HG-U95B:47503_AT Bardet-Biedl syndrome 7 hs
HG-U95C:64721_AT Bardet-Biedl syndrome 7 hs
HG-U95D:79733_AT Bardet-Biedl syndrome 7 hs
HG-U95E:70951_AT Bardet-Biedl syndrome 7 hs
MOUSE430_2:1430941_AT Bardet-Biedl syndrome 7 mm
MOE430B:1430941_AT Bardet-Biedl syndrome 7 mm
MOE430B:1454684_AT Bardet-Biedl syndrome 7 mm
MOUSE430_2:1454684_AT Bardet-Biedl syndrome 7 mm
RAE230B:1380515_AT Bardet-Biedl syndrome 7 (predicted) rn
RAT230_2:1380515_AT Bardet-Biedl syndrome 7 (predicted) rn
RAE230B:1394011_AT Bardet-Biedl syndrome 7 (predicted) rn
RAT230_2:1394011_AT Bardet-Biedl syndrome 7 (predicted) rn
RG-U34A:RC_AA894337_AT Bardet-Biedl syndrome 7 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA22100 Hypothetical protein Y75B8A.12 [Caenorhabditis elegans] ref|NP_499585.1| OSMotic avoidance abnormal family member (osm-12) [Caenorhabditis elegans] 0.0
blast CAE75116 Hypothetical protein CBG23043 [Caenorhabditis briggsae] 0.0
blast NP_082086 Bardet-Biedl syndrome 7 [Mus musculus] gb|AAO16027.1| BBS7 [Mus musculus] 1.0E-115
Sequence
Target Sequence 
>C. ELEGANS:185157_AT
agctgaagcacacgcctggcttcacaatcttcttccaaatgttccatcgaaatgcccgcc
agctgatacaataactaacaattatcagtgctcagttaacggaggaacacagcttcaagt
tgtctatagcaaaggttcggcagttttccgttctgattgtatgacgacaatctgtataat
tcgtgacaaagtgagcgagcaaacgatgaaaatgcagattcgtgtggaagttgcttgtga
attgaatcaagatagtgtgaatcattgcttgaaactgattgatccgaaaattacatcaat
gttaaatattgagaagaataagctgtatgcagcagcgttaaaggagcttgaatcgaacaa
cgacgacgtcttcagcttcctgtccgccgccaacgccaaaatattgaaagatcatgatgc
gatctacgaaaagtcggagggagtctcaattgaggatagcggagttttggcgattcttga
gaatttgatggttgccagaggaaagctcactggaagatcgtcgaaaggaagaggcgatgc
tattcgtgacctgatttcaacggattattctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTGAAGCACACGCCTGGCTTCAC 207 81 1563 Antisense
TGGCTTCACAATCTTCTTCCAAATG 409 543 1579 Antisense
CAAATGTTCCATCGAAATGCCCGCC 100 193 1598 Antisense
AATGCCCGCCAGCTGATACAATAAC 570 165 1613 Antisense
GAGGAACACAGCTTCAAGTTGTCTA 229 405 1664 Antisense
TTCGGCAGTTTTCCGTTCTGATTGT 557 693 1698 Antisense
ACAACGACGACGTCTTCAGCTTCCT 317 113 1919 Antisense
GATAGCGGAGTTTTGGCGATTCTTG 707 423 2017 Antisense
GATGGTTGCCAGAGGAAAGCTCACT 668 407 2049 Antisense
AGAGGCGATGCTATTCGTGACCTGA 330 67 2092 Antisense
GACCTGATTTCAACGGATTATTCTC 556 381 2110 Antisense
Sequence Source Affymetrix Proprietary Database