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[185155_at]

Description H03E18.2 /REP_DB=WormBase Gene ID /WP=CE11560 /TR=Q94249 /GB=AAB07558.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 21      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 333
1 2 3 4 range
A 278.9
(1.2)
P 		156.9
(-1.3)
A 		74.7
(-3)
A 		365.3
(3)
P 		291
B 288.8
(3)
P 		104.7
(-2.6)
A 		91.4
(-3)
A 		261.1
(2.2)
A 		197
C 265.8
(0.3)
P 		204
(-0.9)
A 		96.8
(-3)
A 		407.5
(3)
P 		311
avr 277.8
(1.4) 		155.2
(-1.4) 		87.6
(-3) 		344.6
(3) 		257

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 288.2
(3)
P 		165
(-0.7)
P 		219.1
(0.9)
P 		157.5
(-0.9)
P 		192.3
(0.2)
P 		86.3
(-3)
A 		202
B 200.2
(1.6)
P 		229.8
(3)
P 		111
(-2.4)
A 		161.6
(-0.1)
A 		155.7
(-0.4)
P 		98.8
(-3)
A 		131
C 231.8
(3)
P 		217.3
(2.3)
P 		176.4
(0.4)
M 		177.1
(0.5)
A 		128.9
(-1.8)
M 		102.6
(-3)
A 		129
avr 240.1
(3) 		204
(1.5) 		168.8
(0) 		165.4
(-0.1) 		159
(-0.4) 		95.9
(-3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 101.6
(3)
P 		34.1
(-1.9)
A 		19.5
(-3)
A 		53.5
(-0.5)
P 		82
B 92.1
(3)
P 		25.9
(-2.6)
A 		21.2
(-3)
A 		55.6
(-0.1)
A 		71
C 88
(3)
P 		58.6
(-0.3)
A 		33.8
(-3)
A 		68.7
(0.9)
P 		54
avr 93.9
(3) 		39.5
(-1.7) 		24.8
(-3) 		59.3
(-0) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 53.1
(2.1)
P 		58.7
(3)
P 		47.7
(1.2)
P 		39.9
(0)
P 		58
(2.9)
P 		21
(-3)
A 		38
B 69.7
(2.2)
P 		76.5
(3)
P 		26.9
(-3)
A 		42.8
(-1.1)
A 		63.2
(1.4)
P 		36.9
(-1.8)
A 		50
C 85.9
(3)
P 		66.3
(0.7)
P 		44.9
(-1.8)
M 		35.6
(-2.9)
A 		41.7
(-2.1)
M 		34.4
(-3)
A 		52
avr 69.6
(3) 		67.2
(2.6) 		39.8
(-1.6) 		39.4
(-1.7) 		54.3
(0.6) 		30.8
(-3) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185155_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16060
Sequence Type Exemplar sequence
Representative Public ID H03E18.2 NCBI
Target Description H03E18.2 /REP_DB=WormBase Gene ID /WP=CE11560 /TR=Q94249 /GB=AAB07558.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077043(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077043 NCBI Caenorhabditis elegans H03E18.2 (H03E18.2) mRNA, complete cds. 11/11 None
GENEFINDER00000040476 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8514126:8515401:-1 11/11 None
H03E18.2 ENSEMBL cdna:known chromosome:CEL140:X:8514126:8515401:-1 gene:H03E18.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000040475 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8514124-8515400(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H03E18.2
Entrez Gene 186673 Entrez gene
SwissProt Q94249 EMBL-EBI
WormBase CE11560 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB07558 Hypothetical protein H03E18.2 [Caenorhabditis elegans] ref|NP_509444.1| H03E18.2 [Caenorhabditis elegans] 3.0E-95
blast CAE74913 Hypothetical protein CBG22792 [Caenorhabditis briggsae] 1.0E-72
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509444.1 4 37-59,74-96,109-131,167-189
H03E18.2 4 37-59,74-96,109-131,167-189
GENEFINDER00000040476 4 37-59,74-96,109-131,167-189
Sequence
Target Sequence 
>C. ELEGANS:185155_AT
tgtttccggagtcgttagcatcgcacaggcaatttcccattttgtacttatgttatatga
ttgtgacctgcgaatgattgatatggcatttgcgatttggccaattgtcactgtaaccat
tgcgcttgtatttagctacttctcatactctacacatagctctacttctcttaaacccta
cattgctcatcacattgtcatggcaatttcctactgtttttgcttattcttatttgcaat
gttcgcctggaaacaacacttctttgtggaaattctttcattttgttcaagtttctcgac
actcttttcacatcttgaagagactgacggagaaaaaaagctgcgaattgccggtttcct
gtcttctcagctgctagtcagtctgttctgtcttcatctctctggaccactattttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTCCGGAGTCGTTAGCATCGCA 270 561 156 Antisense
TAGCATCGCACAGGCAATTTCCCAT 364 651 171 Antisense
GTCACTGTAACCATTGCGCTTGTAT 395 465 262 Antisense
TTAGCTACTTCTCATACTCTACACA 361 681 287 Antisense
TCTACACATAGCTCTACTTCTCTTA 76 615 304 Antisense
TAAACCCTACATTGCTCATCACATT 426 641 327 Antisense
TCAAGTTTCTCGACACTCTTTTCAC 286 633 442 Antisense
AAAAGCTGCGAATTGCCGGTTTCCT 467 131 491 Antisense
TGTCTTCTCAGCTGCTAGTCAGTCT 225 559 515 Antisense
TAGTCAGTCTGTTCTGTCTTCATCT 88 655 530 Antisense
TCATCTCTCTGGACCACTATTTTCG 586 619 549 Antisense
Sequence Source Affymetrix Proprietary Database