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[185152_at]

Description F36F12.2 /REP_DB=WormBase Gene ID /WP=CE17782 /TR=O76399 /GB=AAC19201.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 2.4
(-3)
A 		27.4
(1.1)
A 		11.4
(-1.5)
A 		38.7
(3)
A 		36
B 22.6
(0.4)
A 		8.2
(-2.5)
A 		35.7
(3)
A 		5.8
(-3)
A 		30
C 17.6
(-3)
A 		59.4
(3)
P 		39.8
(0.2)
A 		40.5
(0.3)
A 		42
avr 14.2
(-3) 		31.7
(3) 		29
(2.1) 		28.3
(1.8) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 48.6
(3)
A 		14.1
(-2.8)
A 		13.1
(-3)
A 		16.1
(-2.5)
A 		18.7
(-2.1)
A 		17
(-2.3)
A 		36
B 9.4
(-2.7)
A 		29.2
(2.3)
A 		8.3
(-3)
A 		31.9
(3)
A 		24
(1)
A 		23.4
(0.8)
A 		24
C 15.8
(-3)
A 		26.3
(-0.3)
A 		33.1
(1.4)
P 		39.4
(3)
M 		18.4
(-2.3)
A 		16.5
(-2.8)
A 		24
avr 24.6
(0.5) 		23.2
(-0.2) 		18.2
(-3) 		29.1
(3) 		20.4
(-1.8) 		19
(-2.6) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 0.9
(-3)
A 		6
(3)
A 		3
(-0.5)
A 		5.7
(2.6)
A 		5
B 7.2
(2.1)
A 		2
(-2.3)
A 		8.3
(3)
A 		1.2
(-3)
A 		7
C 5.8
(-3)
A 		17.1
(3)
P 		13.9
(1.3)
A 		6.8
(-2.5)
A 		11
avr 4.6
(-3) 		8.4
(3) 		8.4
(3) 		4.6
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 9
(3)
A 		5
(-0.9)
A 		2.9
(-3)
A 		4.1
(-1.8)
A 		5.6
(-0.3)
A 		4.1
(-1.8)
A 		6
B 3.3
(-2)
A 		9.7
(3)
A 		2
(-3)
A 		8.4
(2)
A 		9.7
(3)
A 		8.7
(2.2)
A 		8
C 5.8
(-2.4)
A 		8
(2.2)
A 		8.4
(3)
P 		7.9
(2)
M 		6
(-2)
A 		5.5
(-3)
A 		3
avr 6
(0) 		7.6
(3) 		4.4
(-3) 		6.8
(1.5) 		7.1
(2.1) 		6.1
(0.2) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15101
Sequence Type Exemplar sequence
Representative Public ID F36F12.2 NCBI
Target Description F36F12.2 /REP_DB=WormBase Gene ID /WP=CE17782 /TR=O76399 /GB=AAC19201.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071166(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071166 NCBI Caenorhabditis elegans F36F12.2 (F36F12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000033967 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2091581:2094680:-1 11/11 None
F36F12.2 ENSEMBL cdna:known chromosome:CEL140:V:2091581:2094941:-1 gene:F36F12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000033955 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2091580-2094941(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36F12.2
Entrez Gene 185361 Entrez gene
SwissProt O76399 EMBL-EBI
WormBase CE17782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19201 Hypothetical protein F36F12.2 [Caenorhabditis elegans] ref|NP_503567.1| F36F12.2 [Caenorhabditis elegans] 0.0
blast CAE62244 Hypothetical protein CBG06300 [Caenorhabditis briggsae] 0.0
blast AAF99912 Hypothetical protein F22F7.4 [Caenorhabditis elegans] ref|NP_503572.1| F22F7.4 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185152_AT
tcgttcttccgcccggagagattgaattctacgtggtctcattattcacttaactcggat
gatcgtccaatttatttgacaaaaaagcagaggaaacctatttatcgaaaaatgaagtac
atatataataatggaatatttcatttgaaacacatggttttcgtaaactcaagtaatgtt
cgggaaggagttataccgattaatccaggagataatattactgagttgattagtgaaaga
catttgaaggagatcgatgaggattttttgagcacaatttcccagccagaattcaccagc
ttaacctcctctctgcccaaagatgatttttatacgaacatcgtattccagtgctataat
caatcattttatcacattcgagacgccggccttctttctgcagaatccacgtgtgtaaat
gcttttgattgtgagctttcacaacgagaagcgatgccgtgtaccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGTTCTTCCGCCCGGAGAGATTGA 633 603 910 Antisense
GATTGAATTCTACGTGGTCTCATTA 178 435 929 Antisense
GGTCTCATTATTCACTTAACTCGGA 255 503 944 Antisense
TTAACTCGGATGATCGTCCAATTTA 631 681 959 Antisense
TTTTGAGCACAATTTCCCAGCCAGA 161 679 1175 Antisense
AGCCAGAATTCACCAGCTTAACCTC 406 83 1193 Antisense
CTCCTCTCTGCCCAAAGATGATTTT 348 235 1215 Antisense
ACGAACATCGTATTCCAGTGCTATA 310 91 1243 Antisense
ATTTTATCACATTCGAGACGCCGGC 331 15 1275 Antisense
CTTTCTGCAGAATCCACGTGTGTAA 652 221 1303 Antisense
AACGAGAAGCGATGCCGTGTACCCA 579 139 1352 Antisense
Sequence Source Affymetrix Proprietary Database