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[185151_s_at]

Description C16A11.2 /REP_DB=WormBase Gene ID /WP=CE27067 /TR=O76583 /GB=AAK31415.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 95      6grp_total > 75      4grp_total > 15      6grp_high1_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 157.6
(2)
M 		32.1
(-3)
A 		63.9
(-1.7)
A 		183.3
(3)
A 		151
B 108
(3)
P 		10
(-3)
A 		34.8
(-1.5)
A 		108.4
(3)
A 		98
C 144.2
(3)
P 		8.7
(-3)
A 		39.3
(-1.6)
A 		78
(0.1)
P 		136
avr 136.6
(3) 		16.9
(-3) 		46
(-1.5) 		123.2
(2.3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 152
1 2 3 4 5 6 range
A 82.7
(-3)
A 		87.8
(-2.6)
P 		149.8
(2.3)
P 		156.8
(2.9)
P 		112.1
(-0.7)
P 		158
(3)
P 		75
B 164
(-1.9)
P 		151.3
(-3)
P 		163.4
(-1.9)
P 		218.3
(2.9)
P 		153
(-2.8)
P 		218.9
(3)
P 		68
C 135.8
(-3)
P 		146.8
(-2.3)
P 		158.9
(-1.6)
P 		158
(-1.7)
P 		188.7
(0.2)
P 		234.6
(3)
P 		99
avr 127.5
(-3) 		128.6
(-2.9) 		157.4
(-0.6) 		177.7
(0.9) 		151.3
(-1.1) 		203.8
(3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 57.4
(3)
M 		7
(-3)
A 		16.7
(-1.8)
A 		26.8
(-0.6)
A 		50
B 34.5
(3)
P 		2.5
(-3)
A 		8.1
(-2)
A 		23.1
(0.9)
A 		32
C 47.7
(3)
P 		2.5
(-3)
A 		13.7
(-1.5)
A 		13.2
(-1.6)
P 		45
avr 46.5
(3) 		4
(-3) 		12.8
(-1.8) 		21
(-0.6) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 15.2
(-3)
A 		31.2
(0.9)
P 		32.6
(1.2)
P 		39.8
(3)
P 		33.8
(1.5)
P 		38.5
(2.7)
P 		25
B 57.1
(-0.5)
P 		50.4
(-1.5)
P 		39.7
(-3)
P 		57.8
(-0.4)
P 		62.2
(0.2)
P 		81.6
(3)
P 		42
C 50.3
(-0.6)
P 		44.8
(-1.3)
P 		40.5
(-1.9)
P 		31.8
(-3)
P 		61.1
(0.8)
P 		78.5
(3)
P 		47
avr 40.9
(-2.3) 		42.1
(-2.1) 		37.6
(-3) 		43.1
(-1.8) 		52.4
(0.1) 		66.2
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185151_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4702
Sequence Type Exemplar sequence
Representative Public ID C16A11.2 NCBI
Target Description C16A11.2 /REP_DB=WormBase Gene ID /WP=CE27067 /TR=O76583 /GB=AAK31415.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026788(11), NM_001026789(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026788 NCBI Caenorhabditis elegans C16A11.2a (C16A11.2) mRNA, complete cds. 11/11 None
NM_001026789 NCBI Caenorhabditis elegans C16A11.2b (C16A11.2) mRNA, complete cds. 11/11 None
SNAP00000042942 ENSEMBL cdna:SNAP chromosome:CEL140:II:4238207:4244689:1 11/11 None
C16A11.2a ENSEMBL cdna:known chromosome:CEL140:II:4238197:4244822:1 gene:C16A11.2 11/11 None
C16A11.2b ENSEMBL cdna:known chromosome:CEL140:II:4238197:4244689:1 gene:C16A11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000042948 4/11 Cross Hyb Matching Probes None
GENEFINDER00000042956 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4238205-4244688(+) 97.54 100.0
Public Domain and Genome References
Ensembl C16A11.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT81207 Hypothetical protein C16A11.2a [Caenorhabditis elegans] ref|NP_001021959.1| C16A11.2a [Caenorhabditis elegans] 0.0
blast T33350 hypothetical protein C16A11.2 - Caenorhabditis elegans 0.0
blast AAT81208 Hypothetical protein C16A11.2b [Caenorhabditis elegans] ref|NP_001021960.1| C16A11.2b [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185151_S_AT
gactctcgctgaaaaggatacactggcggcgttaaggacaagaattcgacagaaagaacg
agaagtttcgaatacttctgatgaaatgaagaggctgaaacattttgaaaaagtgctcaa
aaattgcctgaaattgcctttttatagactacttggcaatttgatcgaaatttttttttt
tgaaataaattctaaaaacaattccagtaaattctccaaatcccctaaaatctcaaaaaa
aaaattccagatgctcaaaatctacgaatccctgaaggaagttgacagtctgctggcaca
acgtgaggagatttcacccgcattccagtacgctctggacagcagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCTCGCTGAAAAGGATACACTG 598 373 1581 Antisense
GGATACACTGGCGGCGTTAAGGACA 283 511 1596 Antisense
GCGGCGTTAAGGACAAGAATTCGAC 424 291 1606 Antisense
AAGTTTCGAATACTTCTGATGAAAT 313 157 1643 Antisense
GATGCTCAAAATCTACGAATCCCTG 417 413 1830 Antisense
CTACGAATCCCTGAAGGAAGTTGAC 640 181 1842 Antisense
GGAAGTTGACAGTCTGCTGGCACAA 315 531 1857 Antisense
GACAGTCTGCTGGCACAACGTGAGG 363 369 1864 Antisense
GGCACAACGTGAGGAGATTTCACCC 473 535 1875 Antisense
CCGCATTCCAGTACGCTCTGGACAG 259 263 1898 Antisense
TCCAGTACGCTCTGGACAGCAGAGA 3 589 1904 Antisense
Sequence Source Affymetrix Proprietary Database